3IIB


Conserved Protein Domain Family
M28_Pgcp_like

?
cd03883: M28_Pgcp_like 
Click on image for an interactive view with Cn3D
M28 Zn-Peptidase Plasma glutamate carboxypeptidase
Peptidase M28 family; Plasma glutamate carboxypeptidase (PGCP; blood plasma glutamate carboxypeptidase; EC 3.4.17.21) subfamily. PGCP is a 56kDa glutamate carboxypeptidase that is mainly produced in mammalian placenta and kidney, the majority of which is thought to be secreted into the bloodstream. Similar proteins are also found in other species, including bacteria. These proteins contain protease-associated (PA) domain inserts between the first and second strands of the central beta sheet in the protease-like domain. The PA domains may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. The exact physiological substrates of PGCP are unknown, although this enzyme may play an important role in the hydrolysis of circulating peptides. Its closest homolog encodes an important brain glutamate carboxypeptidase II (NAALADase) identical to the prostate-specific membrane antigen (PSMA), which serves as a marker for prostatic cancer metastasis. Hypermethylation of PGCP gene has been associated with human bronchial epithelial (HBE) cell immortalization and lung cancer. PGCP also provides an attractive target for serological analysis in hepatitis C virus (HCV)-induced hepatocellular carcinoma (HCC) patients.
Statistics
?
PSSM-Id: 349879
Aligned: 19 rows
Threshold Bit Score: 564.242
Created: 3-Jun-2005
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
metal binding
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E D HClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3IIB_A         5 INQKVAEQLAQKAQSSSl-----GYDIVESLTVEVGPRLAGSEQdKVAVDWAIAKLQSLGFd------rVYKEPVTVPVW 73  Shewanella amaz...
AAM38152      27 SALRTAAQLREQALADDt-----GFAVVQSLTTEVGPRIAGGEAdPRAVAWAKAKFASLGFd------kVWTEPVTFPKW 95  Xanthomonas axo...
XP_638041     84 QCDEYGKEIINNAVQKGt----eAYSRLSTLVTLFPGRLSGSEQlENAIDWIQDMMLDDGFd------lVKTDDVEVTHW 153 Dictyostelium d...
NP_421347     24 QDLKTAEALRDKALRDYl-----AWDITEDLTTNIGPRLVGSPAmAKAKDWSVAKFKALGFt------nIKVDEFAKPSW 92  Caulobacter cre...
EDQ82496     120 DAKEDADRIIRSAMNTTi-----VYDRLAYMTDTIGPRFSGTPAlEQAIDWIVARAQEDGIi-------VKTENVMVPRW 187 Physcomitrella ...
CAK68750      10 AIKKNVDNIRQAINSGPnk--hqAYDKLAYIVDTFGPRMWAQPSmALAVDYLYNQIRNWDAtksglvevRLEELDEISTW 87  Paramecium tetr...
AAC28365      37 TFGKEVAELIQYITKGEev--glAYQWLSKLVDGFGHRMVGSDSlEKSIAFLEESLKNDNFdk-----vHTEEVPNLPHW 109 Acanthocheilone...
XP_001011716  37 QILKNLKDVVEDPASQFhh---sAYRRLAYLVDTYGPRLWGSQSlELAIQDLANQIKEDGId------vRLEPVRNFTKW 107 Tetrahymena the...
CAK95158      25 VKTHVIQQIRETIKNPYsplyhsSYNRLAYYVDTYGPRMWGSEDmADSVDALVQEIQNYGFdk-----vWKENLGEITSW 99  Paramecium tetr...
NP_719086     28 AKTDIPAQLQQTALASSl-----GYDIVESLTVEVGPRLAGSPKdVIAVNWAMNKLTSLGFd------kVYKEPVQVPIW 96  Shewanella onei...
Feature 1                                                                                        
3IIB_A        74 RRGiAKASILSP--FPQPLVVTALGg-SIATPAq--GLSATIVRfdtlqdlqnaeAGSLNDKIAFIDakterhrdgkGYG 148 Shewanella amaz...
AAM38152      96 ERRsEHAAVIGA--HAQPLTITALGg-SPGGTVegeVVRFETLAalq-----aapAGSLAGKIAFVDyqmvkardgkDYG 167 Xanthomonas axo...
XP_638041    154 VRGdESATILQP--YHRKMNMLGLGg-SIAGNV---TAEVIVVSsfde---ldtlQDQVKGKIVLFNai------ftNYS 218 Dictyostelium d...
NP_421347     93 SRGeESAELVAP--YAMKLGAVGLGr-TVSTPAg--GIEAEVALfktfadmmaapDGALKGKIVVITqpmvrtqngaGYG 167 Caulobacter cre...
EDQ82496     188 VRGrEFANLIAP--RRKSLRMLGLGg-SVGTGGt--TLRAEAIVvssfv-eldrqKENIRGKIVVYNqe------fvSYS 255 Physcomitrella ...
CAK68750      88 VREsEQLILKSPrkRPQKLGMIGLGniKDGEVV---VVRNWSELdek------gkANKIQGKIVCYNva------wtTYD 152 Paramecium tetr...
AAC28365     110 VRGnDVVEMIEP--RNQRLNVLAIGg-SEPASA---TGEVTVIYdld-----dvkPDDVRGKIVVTAqt------faGYP 172 Acanthocheilone...
XP_001011716 108 VRGqESLTLFEPrpFPQKLKMIGLGr-SVGGNV---TADAVVVTsfdd---lqakAHLVPGKIVIYAvp------wvNYE 174 Tetrahymena the...
CAK95158     100 KRGeESVTLYEPrqYPQKLNMIGLGw-TPAGTV---KAEVEVVHsfe-----elqTKDVKGKIVCFNye------wkGYS 164 Paramecium tetr...
NP_719086     97 ERGeAKAKIISP--VEQPLVITALGg-SVATPVe--GIKAKIARfnslealqqatPDDVKGKIAFIDqktvrhitgeGYG 171 Shewanella onei...
Feature 1                                                                                        
3IIB_A       149 QTASGRSRGAVAAAEkgaVGIIIRSIGtdhdRXAHTGxxryeegvtaIPAAAISNPDADLINAXLKRD-KEVVISLELGS 227 Shewanella amaz...
AAM38152     168 NGGAVRSKGPSEAIRkgaIGFVMRSAGtdshRVPHTGitrfdegltpVPAAALSVPDANQLARLTALGsARVRLALDCGW 247 Xanthomonas axo...
XP_638041    219 STVQYRSGGASAAAKyggVAALVRSITpyslGTPHTGvmfyqdgidkIPTAAITLEDADLIQNLAILN-QTVIVNLYMEA 297 Dictyostelium d...
NP_421347    168 AAGVSRRIGPVEAAKrgaVAMLIRSIStsdsTVPHTGgtasgegvvtIPAAAIGVPEAEQLERLAARK-VPMRVKLKLES 246 Caulobacter cre...
EDQ82496     256 ETVVYRGYGASRAEAygaVAALVRSITpfgiQTPHTGsmh----ssnIPAASITIEDAMMFARMQARG-QTLQIELYMEA 330 Physcomitrella ...
CAK68750     153 DLKFYRQQGPDRASAygaIAVLLRSVAsfsiYSPHTGnvrysgtftkIPAAAITVEDAEMLQRMQDRG-QKITVDLELNN 231 Paramecium tetr...
AAC28365     173 LTLKYRRSVKLFEQLg-aIGVLVKSITsfsiNSPHTGtgae---nttIPAACLTIEEAEMLERLYRSG-KKIVIRMDMKS 247 Acanthocheilone...
XP_001011716 175 TTVAYRGSGAIEAAKlgaVAALVRSITpfsiESPHTGsmsyaanvtqIPAAAIAVEDAEMFLRMFERG-QRIRLNLYMES 253 Tetrahymena the...
CAK95158     165 AGVKFRTNGPKLAEDagaVGTILRSVAsvsiSSPHTGmtny--qnikYPAVAITVEDADMIDRMRQRG-QKVVIEIKTGG 241 Paramecium tetr...
NP_719086    172 KSVGGRSKGAIAAAQkgaVAVIIRSIGtdhdRMAHTGimryqdgvpkIPAAAMSNPDADLVDAMLKRD-PNAVLELNMSP 250 Shewanella onei...
Feature 1                                      #             #                                   
3IIB_A       228 ERRGe-tTSYNVIAEVKGSTKADEIVLIGAHLDSWDE--GTGAIDDGAGVAIVTAAAKHILDl-----PQKPERTIRVVL 299 Shewanella amaz...
AAM38152     248 DGTA---TSYNVIGEITGRSKPKEVVVIGGHLDSWDL--GTGAIDDGAGVAITMAAGHLIGQl-----KQPPKRTIRVVA 317 Xanthomonas axo...
XP_638041    298 QTMPtnaISRNVMAQINGSTYPDEVVVIGGHTDSWDV--AQGAMDDGGGIVVAWEALRLIKSl-----GIIPKRTIRVVG 370 Dictyostelium d...
NP_421347    247 SVNPn-nVAWNISGDIKGSEKPDEVIVIGGHLDSWDV--GTGALDDATGIAITTAAAKLIGDl-----PKRPKRTIRVVM 318 Caulobacter cre...
EDQ82496     331 HALLd-aQSRNIILEIPGCTYSDEYVIVGGHTDSWDI--ADGAMDDGGGAFVSWEAVRLIHAl-----GLRPLRTIRAVL 402 Physcomitrella ...
CAK68750     232 KMMPs--KSHNIIAEIKGSKYPDQIILMGGHFDSWDTgsQTGAMDDGAGTLVTLEALKVVADl-----GIQPLRTLRWIA 304 Paramecium tetr...
AAC28365     248 HYEEp-iNSSNLIFEITGSERPSEVVLLSAHVDSWDV--GQGALDDGAGCAVVWSALHSLKKlaernpKFKPKRTIRGIF 324 Acanthocheilone...
XP_001011716 254 WNVPn-aNSFNVVAELRGSVYPEKILVLGGHTDSWDVgsQTGANDDGGGFVTCYEALRLIAKs-----GLTPKRTIRFIA 327 Tetrahymena the...
CAK95158     242 QQYKt--TSDNILAEIKGSKYPDEIVLMGGHWDSWDVgsQTGANDDGAGVLECLEALKVLKHl-----GIKPKRTIRFIA 314 Paramecium tetr...
NP_719086    251 KDLGt-nTSYNVIAEVTGSSKPNEIVLIGAHLDSWDE--GTGAIDDGAGIAIVAAAAKHIQDl-----PQKPARTIRVVL 322 Shewanella onei...
Feature 1           ##                               #                                           
3IIB_A       300 YAAEEl--GLLGGKTYAKEHEae---lEKHYIAAESDFGA------GPIYQIDWrvaDTAHSPVINAXKVAEPLGvaagn 368 Shewanella amaz...
AAM38152     318 FANEEq--GLHGGKAYAAAHGndakdmALHQIGAESDFGAg----rIYAFNTGAaapDDSRAATKQIAEVLAPLGiayep 391 Xanthomonas axo...
XP_638041    371 WTNEEn--GAAGGAAYAQLYT------NETFFSIESDIGVt----qPLGFNVMAs-eQTITDLQLIADKVLSPIKttsiv 437 Dictyostelium d...
NP_421347    319 WGSEE---SGGSSEAYLAANKda---lSTMVLAGESDTGAd----rIYSLQVPAg--SLDHPVVKAAASVLAPLKiyvdr 386 Caulobacter cre...
EDQ82496     403 WTNEEn--GARGAESYADNHAse---lIRHSIALESDVGTf----sPNGISFAGs-sDARRILELIGGSLLSEIGsgnvs 472 Physcomitrella ...
CAK68750     305 WSGEEmglPNNGNQHYAKYHGd-----EDHVVALENDVGQl----tAIGFGFSGk-lQTSRMVRQLIMNYIPELSvl--- 371 Paramecium tetr...
AAC28365     325 WTSEEq--GYGGAKHYYITHKnd--spEKFYFVSETDTGTfkstnwLAHLSFSGd--KKSMLRLKEITRLLSRNGialgl 398 Acanthocheilone...
XP_001011716 328 WSGEEyggSLSGASQYANDHKde---mDNHIVAFESDLGSr----tPVAWGFSGg-qNGLNYFQDLVSTYFKPIYnitev 399 Tetrahymena the...
CAK95158     315 WSGEEmgmANDGAQHYAKTHSq-----ENHVVAFESDLGSt----kPYGFGVTGg-eRFTQLITYLAQEYLTEIGaeqil 384 Paramecium tetr...
NP_719086    323 YAAEEm--GLIGGKAYAEAHKte---lPLHYIAAESDFGA------GPIYQIDT---KVNEKVFAQVQESIKPMAyngva 388 Shewanella onei...
Feature 1                                                                            #           
3IIB_A       369 ---nkasgGPDVSXLPAl---GVPVASLRQ--------DGSDY---------------------FDYHHTPNDTLDKINP 413 Shewanella amaz...
AAM38152     392 ---skggpGPDVGPISAk---GGAWGWLAQ--------DGTDY---------------------FDLHHTADDTLDKIDP 436 Xanthomonas axo...
XP_638041    438 ----egevGTDNGFLVSn---GKPGAQLIT--------DESKY---------------------FWYHHTAGDAMDKMDP 481 Dictyostelium d...
NP_421347    387 t--paagaGADVSGIERa---GVPVINLNQ--------DASRY---------------------FDYHHTMDDTLDKVRP 432 Caulobacter cre...
EDQ82496     473 ----gvsvGEDVSFLNAn---GVPSGSLNVedvrcgsdDNNPClpyshapypafdednflksgyFWYHHTAADTIDKLSS 545 Physcomitrella ...
CAK68750     372 -------lMLDLELYKTlgdkGVPLMRNIYk------dPNDDYy--------------------FKYHHSAGDTMNILNP 418 Paramecium tetr...
AAC28365     399 ---inssvQGDVTFWAKd---GIPSVNYIPd-------KAVDYy--------------------FYFHHTAGDYMTVLKD 445 Acanthocheilone...
XP_001011716 400 l--dgegeMVDSGYIGSy---GVPMVRNIGqd-----tPSNDYy--------------------FTFHHSAGDSMSVMDP 449 Tetrahymena the...
CAK95158     385 ---pnagsQADSAALRAa--tGTPIMNNKIed-----nETHDFy--------------------FAYHHTAGDSMWMMNA 434 Paramecium tetr...
NP_719086    389 lgdnqasgGPDISMLPAl---GVPVASLRQ--------DGRDY---------------------FDYHHTPNDTLDKINP 436 Shewanella onei...
Feature 1                             
3IIB_A       414 EALAQNVAVYAQFAWVXANSK 434 Shewanella amazonensis SB2B
AAM38152     437 KALAQNVAAYTVFAYLAAEAD 457 Xanthomonas axonopodis pv. citri str. 306
XP_638041    482 SQMNQCVAAMATMALCISNWV 502 Dictyostelium discoideum AX4
NP_421347    433 AELAQNVAAWTSLVYLVADSD 453 Caulobacter crescentus CB15
EDQ82496     546 RQLQHCAATLGVWVYAIANLP 566 Physcomitrella patens subsp. patens
CAK68750     419 DEMDSNVFAISSMMYIIADNP 439 Paramecium tetraurelia
AAC28365     446 GDLEYTTSIFATLGHVIANMD 466 Acanthocheilonema viteae
XP_001011716 450 DQMDENVVGIASLFYLLADAD 470 Tetrahymena thermophila SB210
CAK95158     435 DDMDDNVIAIASMMYLIADHD 455 Paramecium tetraurelia
NP_719086    437 KALAQNVAAYAQFAYIMANSN 457 Shewanella oneidensis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap