2OLM,2D9L


Conserved Protein Domain Family
ArfGap_AGFG

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cd08838: ArfGap_AGFG 
Click on image for an interactive view with Cn3D
ArfGAP domain of the AGFG subfamily (ArfGAP domain and FG repeat-containing proteins)
The ArfGAP domain and FG repeat-containing proteins (AFGF) subfamily of Arf GTPase-activating proteins consists of the two structurally-related members: AGFG1 and AGFG2. AGFG1 (alias: HIV-1 Rev binding protein, HRB; Rev interacting protein, RIP; Rev/Rex activating domain-binding protein, RAB) and AGFG2 are involved in the maintenance and spread of immunodeficiency virus type 1 (HIV-1) infection. The ArfGAP domain of AGFG is related to nucleoporins, which is a class of proteins that mediate nucleocytoplasmic transport. AGFG plays a role in the Rev export pathway, which mediates the nucleocytoplasmic transfer of proteins and RNAs, possibly together by the nuclear export receptor CRM1. In humans, the presence of the FG repeat motifs (11 in AGFG1 and 7 in AGFG2) are thought to be required for these proteins to act as HIV-1 Rev cofactors. Hence, AGFG promotes movement of Rev-responsive element-containing RNAs from the nuclear periphery to the cytoplasm, which is an essential step for HIV-1 replication.
Statistics
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PSSM-Id: 350067
Aligned: 65 rows
Threshold Bit Score: 147.727
Created: 20-Jan-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitearginine finger
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2OLM; human GAP domain of AGFG1 binds Zn(2+) ion
  • Comment:the coordination of the Zn2+ ion by 4 cysteines would indicate that this ion plays a structure stabilization role rather than catalytical role.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #  #                #  #                                         
2OLM_A         13 LKMLRDMTGLpHNRKCFDCDQrGPTYVNMTVGSFVCTSCSGSLRGLNppHRVKSISMttFTQQEIEFLQkhGNEVCKQIW 92   human
Q54DK4         10 YGLLRSLFQDpNNQCCAECNSaNVPYVCIKLGVFICPTCAHFLSTLG--FKVRPIMGssFSEEDISRLQsiGNLVSKQFW 87   Dictyostelium...
CBH17944        5 RDEVRKLSQKdGNRFCMNCRMrGPVYVVLDFGTFVCSACASLHRNKQ--HKVKGITMteFTDEEVARLKvcGNDRAESVW 82   Trypanosoma b...
CDF34815       14 ERKLRQLSRAgGNRYCADCGAsSPNHVVLALGTFVCPLCAGIHRDASr-KGVRNIDSatFSMDDAYRMEdrGNDLARRRW 92   carragheen
XP_003874667   12 KEVLRKLSQNgGNKNCFDCGMrGPLYVVSDFGILVCSSCSAVHRSFQ--HKVKGITMseFTDDEIARFSvsGNDRARKVW 89   Leishmania me...
EGF84176      130 QQILADLLRQeVNKRCFDCLAkFPTCVNVTAFTFVCMSCAGLLREIK--HRIKSISAsiFTLEEMDAIQg-GNSAAQKVW 206  Batrachochytr...
XP_643403       5 DTILWRLRELeENSKCADCTDsFPRYMNTTYGTFVCSVCGAIHRELG--NRVKSISSdkFTQQDIERLEkvGNKMADEIW 82   Dictyostelium...
ORX85379       12 LRVIRELLKLpENKKCFDCPAkSPVYVNLMNNTFICAQCSGLHRELS--HRVKSLSAstFTTSEVSALKegGNQRAKSIW 89   Basidiobolus ...
EET00013       10 KNAIDALRRKpENKQCADCKSlSVPYINLTCGTFVCARCAGIHREFD--HRVKSVSNsiFKLEEIQALG--GNDLDKRTY 85   Giardia intes...
EPB81451       14 SQKVRELLRLpENKKCFDCPTkSPFFVNVSIQTFVCTRCSGLVREVG--HRVKSISAskFSGPEIVALQhgGNEVARTIW 91   Mucor circine...
Feature 1                                              
2OLM_A         93 LGlfddrssaip--dfrdpqkvkeFLQEKYEkkRWYV 127  human
Q54DK4         88 LArwtpmdivmp---ppedpnlesFLRLKYIekRWTS 121  Dictyostelium discoideum
CBH17944       83 LHgfkgerppv-----gndfalqqFFSRVYV--AKEF 112  Trypanosoma brucei gambiense DAL972
CDF34815       93 MArwspkdypep--qpgdketireFIWLKYDg-SWAA 126  carragheen
XP_003874667   90 LStfqdqlprs-----gdvmalkdHVRIAFEerRFWN 121  Leishmania mexicana MHOM/GT/2001/U1103
EGF84176      207 LGkwcditnmap--dgqspesmrvFMDIKYIqkRYYI 241  Batrachochytrium dendrobatidis JAM81
XP_643403      83 LSkwsqqqyplp--fpsdekrvrdFIKMKYIekKWIK 117  Dictyostelium discoideum AX4
ORX85379       90 LAkitpqdiipd---lttvegvrkFMRQKYVekRYLD 123  Basidiobolus meristosporus CBS 931.73
EET00013       86 LPywneqifklpepgtedngrvrdFIRMKYVe-KRFC 121  Giardia intestinalis ATCC 50581
EPB81451       92 LSnynmntvep-----esdgdvrlFMRQKYYeqKWLD 123  Mucor circinelloides f. circinelloides 1006PhL

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