4EUW


Conserved Protein Domain Family
HMG-box_SoxE

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cd22031: HMG-box_SoxE 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in group E SRY-related high-mobility group (HMG) box (Sox) transcription factors
SoxE transcription factors includes three members: Sox8, Sox9, and Sox10. They function as important transcriptional regulators of neural differentiation and nervous system development. They regulate mammalian development directing sex determination, gliogenesis, pancreas specification and neural crest development. SOX-8 is specifically expressed by M cells in the intestinal epithelium. It acts as a transcription factor necessary for the maintenance of spermatogenesis. It may play a role in central nervous system, limb and facial development. SOX-9 is involved in cell differentiation, sex determination, and tumorigenesis. It plays a role in chondrocyte differentiation and skeletal development. SOX-10 plays a central role in the development of melanocytes and glial cells from neural crest precursors.
Statistics
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PSSM-Id: 438840
Aligned: 51 rows
Threshold Bit Score: 151.389
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:4EUW; Homo sapiens SOX-9 binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #### ## ##   #  #          ###  #   #  #                  #         # #    
4EUW_A        29 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNesEKRPFVEEAERLRVQHKKDHPDYKYQPRR 103 human
RDD36902      60 HIKRPMNAFMVWAQAARQKISEQYPNLHNAELSKTLGKLWKLLGdeQKQPFIEEAERLRIKHKMDHPDYKYQPRR 134 Trichoplax sp. H2
KZS07080      93 HVKRPMNAFMVWAQEARRQLADQYPQLHNAELSKTLGRLWRVLSddDKRPFVKQAERLRELHKQEHPDYKYQPRR 167 Daphnia magna
NP_651839     76 HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKdsDKKPFMEFAEKLRMTHKQEHPDYKYQPRR 150 fruit fly
XP_002109760  60 HIKRPMNAFMVWAQAARQKISEQYPNLHNAELSKTLGKLWKLLGdeQKQPFIEEAERLRIKHKMDHPDYKYQPRR 134 Trichoplax adhaerens
KXJ18409     108 HIKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSasEKQPYVDEAARLDKRHKEDNPDYKYRPRR 182 
CAB63903      76 HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKdsDKKPFMEFAEKLRMTHKQEHPDYKYQPRR 150 fruit fly
EDW82976      74 HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKdsDKKPFMEFAEKLRMTHKQEHPDYKYQPRR 148 Drosophila willistoni
ROT79770     126 HVKRPMNAFMVWAQEARRRLSCSHRQVHNAELSKSLGRIWRGMTedQKRPFIERADHLRRKHKQEYPDYKYQPRR 200 Pacific white shrimp
XP_028395565  53 RVKRPMNAFMLYAQVARRKVATKYPNLNYAKLSKTLGKIWQVLPeeERRPFIQEAERLRTQHKLKHPDYKYTPKR 127 Dendronephthya gigantea

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