1B5T


Conserved Protein Domain Family
MTHFR

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cd00537: MTHFR 
Click on image for an interactive view with Cn3D
Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Statistics
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PSSM-Id: 238299
Aligned: 78 rows
Threshold Bit Score: 157.007
Created: 7-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
FAD binding
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:FAD binding site [chemical binding site]
Evidence:
  • Structure:1B5T_A binds flavin-adenine dinucleotide (FAD)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #                                  #         
1B5T_A        5 VSFEFFPPRTSEMEQTLWNSIDRlsslkpkfVSVTYGAns-------gERDRTHSIIKGIKDRtgLEAAPHLTCIDATp- 76  Escherichia coli
NP_394439    20 KSVEIVPSRNFGTDDLIAAADMLdgr--vnaLTCPENPrg-------sPGIDPIMALYIISNErnIIPVPHITPRDKNr- 89  Thermoplasma aci...
NP_111644    13 RSVEIVPSRNQGLEELAHSLDSLegk--anaLTSPENPrg-------sPGIDPIITLFFLSKDrnIIPIPHITPRDKNk- 82  Thermoplasma vol...
NP_635709    12 ITDAYSLEVGAHDMPALTAAAPQimr--gssMFIPYLPs--------qNDDARLAAAQRVRALg-FAPMPHLSARRIAs- 79  Xanthomonas camp...
ZP_00096406 154 ITDGFSLEMTAKDEASLRDAAPLipa--dtpIAVTFLPg---------EDVAARVAATVAVRQlgFEPMPHFSARRITs- 221 Novosphingobium ...
AAG42847      5 LLDDFSLEMTGKDVPRLEEARDGipp--gtrINITFLAg---------EDTATRLTAARAVKRlgFVPVPHISARRLPs- 72  Streptomyces nog...
CAB40737     35 LSLEVSPREALRGAEGLETLAPGt------rVFITRLPk--------gSFEETLAASTRLRELg-LRPVPHITARTTSd- 98  Methylobacterium...
NP_354426    51 WSIEVMPRTAAKIDDFRNILPDGt------rVYIAHIDg--------tPIADMVSTAKRLHDEg-FPVMPHLPARGISg- 114 Agrobacterium tu...
NP_436413    43 ISIELAPEQVRNFAPQADTLALGs------rVFLTHLAg--------kPEVLQVEAAARIIEMg-YVAVPHLAARNFKse 107 Sinorhizobium me...
AAF50068     39 GTLVAERTAQHRLFYGIEVMASDpsgr-ptcLDFNHFLpllptfvsfvWLSQRYWDVEPVGQVesLQMAQHLATRIPVlp 117 fruit fly
Feature 1                                 ###            ##                   # #     # #       
1B5T_A       77 -----DELRTIARDYWnn-gIRHIVALRGDlppgs-gkpemYASDLVTLLKev--adFDISVAAYP--EVHPEak----s 141 Escherichia coli
NP_394439    90 -----VHILSQIETAQkv-gIRNFFTIGGDpinpkyesrevREIDVMEIIRm-----IKGRENAIVgaALNPYrd----- 153 Thermoplasma aci...
NP_111644    83 -----VHIISQINTANkf-gINNFFVIGGDpinpkyeshevREIDPIDLIKl-----IKANSGSTVgaALNPYrn----- 146 Thermoplasma vol...
NP_635709    80 ----rYALQAFVRRAVdeagVERCLVIAGDapsav--gpfsDSVSLIETGVfersgiKAIGVAGHP--EGHPSmp----- 146 Xanthomonas camp...
ZP_00096406 222 ----eDDFEGYLKAVVeqagVERCFIVAGDppepv--gpyfDTSALIATGAfersgiKAIGIGGHP--EGHPNmt----- 288 Novosphingobium ...
AAG42847     73 ----rPALEEFLAGLAahgtAENVFVVGGDparpe--gpyaDALAVLRTGLlrrhgvRHVGIAGYP--EGHPGit----- 139 Streptomyces nog...
CAB40737     99 ----aATFAKQLGRYVgeagVREILLVAGSnekae--gafsNTLQILESGViessglTALNVAGHP--EGHPQad----- 165 Methylobacterium...
NP_354426   115 ----kNELEDWLKRYQgeagVTQALLLGGGqkqpa--gsfsSSIDMIETGLfdkmgfTHLHLAGHP--EGNRDidsd-gs 185 Agrobacterium tu...
NP_436413   108 ----rDYISHVEAHSRn--gIDEVLFLGGNpalfp--gplgESAELLAHPVlsdssiRTAFVAGYP--EGHPNis----- 172 Sinorhizobium me...
AAF50068    118 hvsayRMSRQRLDQFLal-nFSSLLAVRGDrvhed--qdfsISYPMVEQSIrqrgetISVCVGGYP--EGYTSlgdipqn 192 fruit fly
Feature 1          #  #  ##             # #                                                     
1B5T_A      142 aQADLLNLKRKVda-----gANRAITQFFFDvESYLRFRDRCVsagidveIIPGILPVsnfkQAKKFADMtnVRIPAWMA 216 Escherichia coli
NP_394439   154 vEPEIVGAKIKSg-------ADFFISQAVYS-AEYLQKDWIKKrn---fkLIAGFLPLtkksQVKFSENLg-IVIPDSVK 221 Thermoplasma aci...
NP_111644   147 vEEEIAWAKKNAg-------ADFFITQAIYS-SDALSMDWLKKrn---fkLIAGFLPLirknQVEFSEKLg-IFLPKVVK 214 Thermoplasma vol...
NP_635709   147 aSAQWDVLERKCrsiaergmAPLIVTQFAFDaDTVLTWLEALRargiahpVHVGVPGPagvaVLARYAARcgVGACASML 226 Xanthomonas camp...
ZP_00096406 289 eAECWAVLEKKVaeierrgmAPLIVTQFGFDpDAFLAWLKELRargidapVRIGVPGPagikRLLAFAARcgVGASTAVL 368 Novosphingobium ...
AAG42847    140 dRALWSALTDKAaaidadrfGGDVITQFGFDaDPVLAWLEALRargvrlpVRVGVPGPagvrRLLGYATRfgVGTSASVA 219 Streptomyces nog...
CAB40737    166 eRELHRALEVKNafstrtgiPLTIVTQFFFDpAPIIAWEARIRekgnrlpIDIGLHGVtgvaSLAKHAVAcgVGASIKVL 245 Methylobacterium...
NP_354426   186 sRGVDQALLWKQdfasrtdaRLALTTQFAFEaKVVIEWAKRIGnmgvtipVHVGIAGPtklqTLIKFAIAcgVGPSLKVL 265 Agrobacterium tu...
NP_436413   173 eARLKDALKRKLeicarrslEPRIVSQFAFDgAMIGAWAKRLHddfpevpIHVGLAGVtsltKLIRFAAMcgVGPSIAAL 252 Sinorhizobium me...
AAF50068    193 sAKNMEFLKAKIda-----gADCIITQLCYRpEVIVQFVKDCRaagisvpIVVGLMSHesfrSYSMIEQItgVHLPDDLR 267 fruit fly
Feature 1                                                       #               
1B5T_A      217 qmfdg----ldddAETRKLVGANIAMDMVKilsr------egvkDFHFYTLnraemsYAICHTL 270 Escherichia coli
NP_394439   222 qrl--------lnSEDVISTSMKIITEVFDevke-------yvdGIHIMPLghneiaAQILETI 270 Thermoplasma acidophilum
NP_111644   215 ekl--------lnSEDIRSTSVNIILNVFDevkd-------fvdGIHIMPLghndiaADILGSI 263 Thermoplasma volcanium
NP_635709   227 skyg-----islgKLFGTAGPDRFVDRLTAglsea-----hgdvSLHFYPFggiaqsVAWVEQY 280 Xanthomonas campestris pv. campe...
ZP_00096406 369 kkyg-----isvtNLLGTAGPDKLVDAFAKglgpe-----hgkvRLHFYPFggltktLEWIHGY 422 Novosphingobium aromaticivorans
AAG42847    220 rkyg-----fsltNLMGTTGPDRFLHALADrydpg----rhgvvKVHFYTFgglratAEWVDGF 274 Streptomyces nogalater
CAB40737    246 gshs-----gsvlQFAQIRTPDRLLSGLAAakardp---anlfrNIHVFPLggfkrtVEWANAV 301 Methylobacterium chloromethanicum
NP_354426   266 qkra-----ldlsRLFVPYEPTDFIAELIDhkaanp---dslieHVHIFPLggikpsAEWMKKH 321 Agrobacterium tumefaciens str. C...
NP_436413   253 rrsv-----sgllNIVADRNPADVIDAVSKaypdt-----vtplHLHFFPFggwektLTWLGDY 306 Sinorhizobium meliloti
AAF50068    268 eqldqlhsahmkdMKSDQDLIRRFFVSLTVrtirnvldadvgvwGFHFFTLnrf-ksVQAVLQE 330 fruit fly

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