2JCM,2BDE,2JC9


Conserved Protein Domain Family
HAD_cN-II

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cd07522: HAD_cN-II 
Click on image for an interactive view with Cn3D
cytosolic 5'-nucleotidase II (cN-II) similar to human NT5DC1 (5'-nucleotidase domain-containing protein 1) and NT5DC2
Cytosolic 5'-nucleotidase II (cN-II), also known as purine 5'-nucleotidase, IMP-GMP specific nucleotidase, or high Km 5prime-nucleotidase, catalyzes the dephosphorylation of 6-hydroxypurine nucleoside monophosphates. It is ubiquitously expressed and likely to play an important role in the regulation of purine nucleotide interconversions and in the regulation of IMP and GMP pools within the cell. It is also acts as a phosphotransferase, catalyzing the reverse reaction, the transfer of a phosphate from a monophosphate substrate to a nucleoside acceptor, to form a nucleoside monophosphate. The nucleoside acceptor is preferentially inosine and deoxyinosine, phosphate donors include any 6-hydroxypurine monophosphate substrate of the nucleotidase reaction. Both the dephosphorylation and phosphotransferase reactions are allosterically activated by adenine-based nucleotides and 2,3-bisphosphoglycerate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319824
Aligned: 20 rows
Threshold Bit Score: 378.152
Created: 26-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on human cytosolic 5'-nucleotidase II and on other haloacid dehalogenase (HAD) superfamily members with structure
  • Structure:2JCM: human cytosolic 5'-nucleotidase II binds beryllium trifluoride and Mg2+ in the active site
  • Structure:2JC9: human cytosolic 5'-nucleotidase II binds Mg2+ and phosphate ion in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             #####                                                           
2JCM_A             55 FVNRSLamekikCFGFXMDYTLAVYKspEYESLGFELTVERLVs-IGYPQELL--SFAYDSTfptRGLVFDTLYGNLLKV 131 human
NP_001070611      140 YANNEVnleevdIYGFDYDYTLALYSs-ALDEMIYNKAREFLVqhYKYPEGIS--KYDYIPNfatRGLHYDIQKGLLMKI 216 zebrafish
REF_tigr:SRU_2783  11 FCNRTLnlrgiqAIGYDMDYTLIHYHmrKWEKRAYTFIREGLQa-KGWPVDDL--QFDPELAi--RGLVIDVERGNVVKA 85  Salinibact...
NP_001086575      120 YANNEVclgdieVYGFDYDYTLALYSs-TLHSMIFNTARDILVeqYKYPDAIR--KYEYLPNfavRGLHYDINKGVLMKI 196 African cl...
Q9H857             57 YANNEIslrdveVYGFDYDYTLAQYAd-ALHPEIFSTARDILIehYKYPEGIR--KYDYNPSfaiRGLHYDIQKSLLMKI 133 human
NP_610499         101 FACNELdlsevqVYGFDYDYTLACYKp-ILEDLLYNLAREMLVkrFRYPEDIL--QLEYEPNfavRGLHYDVEKGLLVKL 177 fruit fly
Q75K12            149 FINSELkleeidVFGFDYDYTLANYGd-QVQHLIYDLAMSHLVdeQKYPMALK--EIKYDPTfaiRGLHFDVNHGLLMKL 225 Dictyostel...
NP_612095         102 SYHKELllkdygIVGFDLDGTLLRYNlhEMSALIYQVLKQFLVeqKGYDRDLLlqSLNLDFLq--KGLFLDGPRGNVLKL 179 fruit fly
NP_179967         100 YVNKNLrldniqVYGFDYDYTLAHYSs-HLQSLIYDLAKKHMVneFRYPDVCT--QFEYDPTfpiRGLYYDKLKGCLMKL 176 thale cress
NP_199707         166 FCSRTLnlrsisAIGYDMDYTLMHYNvmAWEGKAYDYCMENLKs-MGFPVDGL--AFDPELVi--RGLMIDKEKGNLVKA 240 thale cress
Feature 1                                                                                             
2JCM_A            132 Da--yGNLLVCAHGFNFIRgpetreqyp---------------nkfiqrddtERFYILnTLFNLPETYLLACLVDFFTNc 194 human
NP_001070611      217 DafhyIQLGTVYRGLKPVPddevmklyggsnh-------vplhqvsgfygkgPKMKQFmDVFSIPEMTLLAAANDYFISn 289 zebrafish
REF_tigr:SRU_2783  86 Nr--fGYVKRAFHGTTPLGyerqrdeyq----------------rtlvdlgeDRWHFLnTLFSISSACMYMQLVDLLDAd 147 Salinibact...
NP_001086575      197 DayhyIELGTAYRGLKPVPdeevmklyqgtnh-------vplhqvsgfygkgPAVKQFmDIFSLPEITLLAVANDFFLTn 269 African cl...
Q9H857            134 DafhyVQLGTAYRGLQPVPdeevielyggtqh-------iplyqmsgfygkgPSIKQFmDIFSLPEMALLSCVVDYFLGh 206 human
NP_610499         178 DsflqLQLGSVYRGRTKVEadevlklyhnrllpi---ayvegpnnsyrhntnSKMVQLaDLFSVPEMCLLCNVIEYFERn 254 fruit fly
Q75K12            226 DylnnIQAGAIYHGRRPLTkeeviqiygs--------------mqlkrlycdSFLKPMsDIFCLPEACLIANTIQYLTDh 291 Dictyostel...
NP_612095         180 Ss--eAQILRATHGTRLLSdteiqaiygrdrrweittafyrdplstwngdasTQMRSLlDYFDMPSALVFAQAVDLVDRg 257 fruit fly
NP_179967         177 DffgsIEPDGCYFGRRKLSrkeiesmyg---------------trhigrdqaRGLVGLmDFFCFSEACLIADMVQYFVDa 241 thale cress
NP_199707         241 Dr--fGYVKRAMHGTKMLSnkavseiyg---------------relvdlrnqSRWEFLnTFFSVSEALAYAQMVDRLDDg 303 thale cress
Feature 1                                                                                             
2JCM_A            195 prytscetgfkdgdlfmsyRSMFQDVRDAVDWVHyk-------gsLKEKTVENLEKYVVkd-gkLPLLLSRMKe-vGKVF 265 human
NP_001070611      290 die-------------ydpVHLYKDVSDAIGMVHik-------gyMYKWIMQDLEKYILrg-deTYAVLHRLAsqgKKLF 348 zebrafish
REF_tigr:SRU_2783 148 aleg-----------smgyTDLWERVQHTLDEAHme-------grLKEAIVQHPERFVDldpqmPLTLLDQKRa-gKKLL 208 Salinibact...
NP_001086575      270 did-------------ydpIHLYKDVTDAIRDVHik-------gfMYKWIMQDLEKYILrg-deTYAVLHRLAsqgKKLF 328 African cl...
Q9H857            207 sle-------------fdqAHLYKDVTDAIRDVHvk-------glMYQWIEQDMEKYILrg-deTFAVLSRLVahgKQLF 265 human
NP_610499         255 rid-------------ynpEIVFHDTRTAMGSCHp---------iMHGKVMRNTEKYIErn-pkLVKFFEKLQqagKNLF 311 fruit fly
Q75K12            292 nla-------------fepRIIHEDVTAAVGKVHlg-------ggLHNKIISDFPLYLNkh-plLGEFLLKLKshgKKLF 350 Dictyostel...
NP_612095         258 kkps-----------ageeYQVWQDVQAGLMNIYsrenfandqslYFKSMRAEPERFVLrtdpsVMNWLGELRksgKKLF 326 fruit fly
NP_179967         242 kle-------------fdaSNIYNDVNRAIQHVHrs-------glVHRGILADPNRYLLkn-gqLLRFLRMLKdkgKKLF 300 thale cress
NP_199707         304 fisad--------lgtldyKGLYKAVAKALFRAHve-------gqLKSEIMSKPELFVEpd-peLPLALLDQKeagKKLL 367 thale cress
Feature 1               ##                                         #                                  
2JCM_A            266 LATNSdyKYTDKIMTYlfdfphgpkpgsshrpWQSYFDLILVdARKPLFFGeg--tvLRQVDtktgklkigtytgplqhG 343 human
NP_001070611      349 LITNSpfSFVDKGMKYmvg-----------keWRDFFDVVIVqADKPHFFNdci-kpFRRLDsngdlqwd--riktlekG 414 zebrafish
REF_tigr:SRU_2783 209 LITNSewSYAQPMLAYafngfl-----pddmtWRDLFDLSIVgARKPDFFSvdmpafRIERDdgllreh---kngpleeD 280 Salinibact...
NP_001086575      329 LITNSpfSFVDKGMKYmvg-----------kdWRDFFDVVIVqADKPHFFNdci-kpFRRLDkngdlrwd--kitslekG 394 African cl...
Q9H857            266 LITNSpfSFVDKGMRHmvg-----------pdWRQLFDVVIVqADKPSFFTdrr-kpFRKLDekgslqwd--ritrlekG 331 human
NP_610499         312 LVTNSpySFVNCGMSFlvg-----------anWRDFFDVVIVqARKPKFFTde--srPIRLFdertqshlwdrvfklekG 378 fruit fly
Q75K12            351 LLTNNsyFYANHGMKYllndql----ngkyedWTDVFDVIITkCDKPSFFGkg--rpFRMYHpdsdrydw-nevnhfepK 423 Dictyostel...
NP_612095         327 LLTGSnvDFANLTATQalg-----------kdWRKYFDFVVTyAKKPGFFTmq--rpFMQVDveklaelp-qeadnikaG 392 fruit fly
NP_179967         301 LLTNSpyNFVDGGMRFlmeesf-----gfgdsWRELFDVVIAkANKPEFYTse--hpFRCYDserdnlaf-tkvdafdpK 372 thale cress
NP_199707         368 LITNSdyHYTDKMMKHsfnkfl-----pndmdWRDLFDMVIVsARKPEFFQms--hpLYEVVtgeglmr---pcfkaetG 437 thale cress
Feature 1                                            ###  ##                                          
2JCM_A            344 IVYSGGSSDTICDLl------gAKGKDILYIGDHIFGDILKSKKrqGWRTFLVIPELaqelhvwtdksslfeelqsldif 417 human
NP_001070611      415 QIYKQGNLVDFLKLt------gWRGSKVFYFGDHLYSDLADLMLrhGWRTGAIVPELevetkvvnteqyaqsltwlqalt 488 zebrafish
REF_tigr:SRU_2783 281 SVYVGGNAPLVERTl------gLRGEEILYVGDHLFVDVNVSKKvlRWRTALVVRELeqeieafrsfadrqahlsrlmeq 354 Salinibact...
NP_001086575      395 QVYKQGNLFDFIHLt------gWRGSKVLYFGDHLYSDLADLMLrhGWRTGAIVPELetetkivnteqysqsltwlqalt 468 African cl...
Q9H857            332 KIYRQGNLFDFLRLt------eWRGPRVLYFGDHLYSDLADLMLrhGWRTGAIIPELereiriinteqymhsltwqqalt 405 human
NP_610499         379 KIYYEGSVRQLQELk------gWRGHSVLYFGDHPYSDLADVTLkhSWRTGAIISELaheiktlnrkdfkmsanwlqmlt 452 fruit fly
Q75K12            424 KVYVGGSLKQFTNVs------kWRGRSVMYFGDHLYSDLVEPSQkeGWKTGVIIKELevevgiqnspkyreqlaellqle 497 Dictyostel...
NP_612095         393 EVYSQGNWHQLHTAmagmlqkkPSEAKALYFGDNIIQDVYTPVKhrDFDAVAIAEELlledgkypyaaeldsqlwgpyfa 472 fruit fly
NP_179967         373 KVYYHGCLKSFLEIt------kWHGPEVIYFGDHLFSDLRGPSKa-GWRTAAIIHELereiqiqnddsyrfeqakfhiiq 445 thale cress
NP_199707         438 GLYSGGSAQMIESSl------nVHGDEILYVGDHIYTDVSVSKVhlRWRTALICRELeeeymaligsrghreelielinq 511 thale cress
Feature 1                                                                                             
2JCM_A            418 laelykhl--------------------------------dsssnerpdissiqrrikkvthdmdmcygmmGSLFRSGsr 465 human
NP_001070611      489 gllermqmy-------------------------------rdpeskkvlqewlkereelravtknlfnphfGSIFRTChn 537 zebrafish
REF_tigr:SRU_2783 355 keqleaefsakrlqrqrldeny-----getdgheiealeqemsalrtrltaldediaplakassqlvnenwGPLMRTGkd 429 Salinibact...
NP_001086575      469 gllermqnf-------------------------------kdpesqlvqqdwmkerhelravtknlfnpqfGSIFRTChn 517 African cl...
Q9H857            406 gllermqty-------------------------------qdaesrqvlaawmkerqelrcitkalfnaqfGSIFRTFhn 454 human
NP_610499         453 qliedtqdd-------------------------------dseaaqiclkewmeerdqlrnktknvfneqfGSVFRTYhn 501 fruit fly
Q75K12            498 dvirkcqff-------------------------------sgekkelfleqlkterykkrlalkepfnanfGSLFRTHtn 546 Dictyostel...
NP_612095         473 ldctptlws-------------------------------sfissyaqlcvptveqvaqtapdkrivchnpYGFSPRLp- 520 fruit fly
NP_179967         446 ellgrfhatvsn-------------------------nqrseacqslldelnnarqrardtmkqmfnrsfgATFVTDTgq 500 thale cress
NP_199707         512 kevvgdlfnqlrlalqrrskgrpaqtlaatnlddqeltetmqkllivmqrlddkiglmletdgelfnkrwgFLSRAGLwd 591 thale cress
Feature 1                              
2JCM_A            466 qtlFASQVMRYADLYAA 482 human
NP_001070611      538 ptyFSRRLCRFSDLYMA 554 zebrafish
REF_tigr:SRU_2783 430 kslFARQVERYADVYTG 446 Salinibacter ruber DSM 13855
NP_001086575      518 ptyFSRRLCRFSDLYMA 534 African clawed frog
Q9H857            455 ptyFSRRLVRFSDLYMA 471 human
NP_610499         502 ptyFSRRLFRFADIYTS 518 fruit fly
Q75K12            547 atiFASSLQRHADIYTS 563 Dictyostelium discoideum
NP_612095         521 ---KELETVQLKSCWRG 534 fruit fly
NP_179967         501 esaFSYHIHQYADVYTS 517 thale cress
NP_199707         592 kshLMRQIEKYADIYTS 608 thale cress

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