6R22


Conserved Protein Domain Family
Ty3_capsid

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pfam19259: Ty3_capsid 
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Ty3 transposon capsid-like protein
This entry corresponds to the capsid protein found in the Ty3 transposons of yeast as well as other transposable elements.
Statistics
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PSSM-Id: 437091
Aligned: 6 rows
Threshold Bit Score: 263.178
Created: 27-Mar-2022
Updated: 13-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6R22_A        16 LPVECLPNFPIQPSLTFRG-RNDSHKLKNFISEImLNMSMISWPNDASRIVYCRRHLLNPAAQWANDFVQEQGILEITFD 94 
Q6BV11        44 IHRETHTFLMHATIGPYSG-SKNPSRIKYFISEI-LRISERFSLNDTQLITLSGRNMTGRAEEWFHAYRCSAKCRDETFQ 121 Debaryomyces ha...
EJT43768      13 LPVECLPNFPIQPALLFRG-KNDSHKLKNFISEImLNMSMIPWPNEASRIVYCRRHLLNPAAQWANDFVQEQGILEITFD 91 
XP_004178103  12 GHSETKPIDTKVKLMTFDG-KEDVLSLPKFVATLkLQMVTQQAITDAEKIAFFAQHLTGNAVTWALNWVDE-PPTDATWE 89 
XP_001644706  13 AETTSTPQYMYRVTLPFHG-THDVLKINSFLSTMrIQFEFHDIP-EKKRIHFVANHFESLASLWFHSWRED--NKDASYE 88 
CCH60185       2 SSPVAVMPAEIKVPHDFTGeRKDIIKLHSFLQSLeVQFVVKRVTNDYERICHLAANLYGPALDWFMTFSGNHDVSEMAFD 81 
6R22_A        95 TFIQGLYQHFYKPPDINKIFNAITQLSEAKlGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVRMHKPET 174
Q6BV11       122 QFTHHLIHHFAGANDKQQQVEDIVNLKQNN-RVIEYSSHFESFLQKLPKDFFTEEQKVIFYISGLKPKIKIEVQHEHPLT 200 Debaryomyces ha...
EJT43768      92 TFIQGLYQHFYKPPDINKIFKTINQLSEAKlGIERLNKKFKMIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVIMHKPKT 171
XP_004178103  90 NFIKDFESHYTSKIDIHKLLNFIHNINEASiGIERYNASYRRLIALLPKDLWSEKAILAQYARNLSPTTYERIAAAEPST 169
XP_001644706  89 TFVKAFKKRFERIPDPEQLFNDMERLQPMEmGSDAFITEFNRLYRLLPPGSLSLVAAKHFYLKNMDRSIAIAIRLANPQT 168
CCH60185      82 AFKEAFKQAFQGKFDSYDVIQKLSSLTQKD-KIEAYVSTFNRYRKLLPPRSLSNDVLINLFIKGLKPNTRKDLRLRTVSS 160
6R22_A       175 LKDAMEEAY--QTTALTERFFPGFE------LDADGDTII 206
Q6BV11       201 LIEAIEISQ--VYENIIKVGSFGNNqvkktvELDPQRKVE 238 Debaryomyces hansenii
EJT43768     172 LRGAMEEAY--QTTALTERFFPEFE------LDADGDTII 203
XP_004178103 170 LKKAMVIAY--ETIPIQSREFSTGTqqsfnlPMGTQQSRM 207
XP_001644706 169 FEELYNITY--DYIPYKERTSYTPTrnenakSTDDILATT 206
CCH60185     161 FYEATQLAIraEHCCYYPGISPLLDdnstptVDADGDVIM 200
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