2OYC,2C4N,3QGM,1PW5,2CFT


Conserved Protein Domain Family
HAD_Pase_UmpH-like

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cd07508: HAD_Pase_UmpH-like 
Click on image for an interactive view with Cn3D
haloacid dehalogenase-like superfamily phosphatases, UmpH/NagD family
Phosphatases in this UmpH/NagD family include Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase , Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase, human PGP phosphoglycolate phosphatase, Schizosaccharomyces pombe PHO2 p-nitrophenylphosphatase, Bacillus AraL a putative sugar phosphatase, and Plasmodium falciparum para nitrophenyl phosphate phosphatase PNPase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319811
Aligned: 10 rows
Threshold Bit Score: 303.902
Created: 12-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on various UmpH/NagD family phosphatases and on other haloacid dehalogenase superfamily members with structure
  • Structure:2C4N: Escherichia coli NagD binds phosphate and Mg2+ in the active site
  • Structure:3QGM: Archaeoglobus fulgidus P-nitrophenyl phosphatase binds Ca2+ in the active site
  • Structure:2CFT: human pyridoxal 5'-phosphate phosphatase binds pyridoxal phosphate and Ca2+ in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #####                            ####                                       
2OYC_A        23 GVLFDCDGVLWnge-ravPGAPELLERLaraGKAALFVSNNS---RRARPELALRFArlgfgglraEQLFSSAlCAARLL 98  human
2C4N_A         5 NVICDIDGVLMhdn-vavPGAAEFLHGImdkGLPLVLLTNYPsqtGQDLANRFATAGvdv----pdSVFYTSAmATADFL 79  Escherichia coli
3QGM_A        10 GYIIDIDGVIGksv-tpiPEGVEGVKKLkelGKKIIFVSNNStrsRRILLERLRSFGlev----geDEILVATyATARFI 84  Archaeoglobus f...
1PW5_A         7 LFILDXDGTFYldd-sllPGSLEFLETLkekNKRFVFFTNNSslgAQDYVRKLRNXGvdv----pdDAVVTSGeITAEHX 81  Thermotoga mari...
NP_728790     26 SVILDADGVLWhfs-kaiDGAVDTFNYMnttGRKIFIISNNSeisRQEMADKAKGFGiei----keDNVLTSSfSCANFL 100 fruit fly
NP_572760     24 RVVSDIDGVLWtfe-qsiPRAADGYAALeqmGKHLTFLTNNSvrtSEQCVKLFAKIGmqv----hpEQIWHPAkSIVSYL 98  fruit fly
NP_001040333  25 HVLSDCDGVIWtqd--slPRVGEFFKQMkkrGKTVNFVSNNSlrsRANYEAQFKAASidn----gfESLIIPSiAVAEYL 98  domestic silkworm
NP_570021     24 LVISDCDGVVWllv-gwiPNTGAAVNALkaaGKQIKFVSNNSfrsEEDYMEKFRHIGakn---vqeDDIVHPVkTIVRYL 99  fruit fly
NP_001259468  24 LVFCDCDGVVWyplrdfiPGSAEALAHLahlGKDVTFVTNNSissVKEHIEKFEKQGhlk---ideHQIVHPAqTICDHL 100 fruit fly
2CFT_A        23 GVLFDCDGVLWnge-ravPGAPELLERLaraGKAALFVSNNS---RRARPELALRFArlgfgglraEQLFSSAlCAARLL 98  human
Feature 1                                                                                        
2OYC_A        99 RqrlpgppdapgaVFVLGGEGLRAELRaaglrlagdps-----------agdgaaprvrAVLVGydehfsfakLREACah 167 human
2C4N_A        80 Rrqe------gkkAYVVGEGALIHELYkagfti--------------------tdvnpdFVIVGetrsynwdmMHKAAyf 133 Escherichia coli
3QGM_A        85 Arekp-----nakVFTTGEEGLIEELRlagleiv-------------------dydeaeYLVVGsnrkinfelXTKALra 140 Archaeoglobus f...
1PW5_A        82 Lkrfg-----rcrIFLLGTPQLKKVFEayghvi--------------------deenpdFVVLGfdktltyerLKKACil 136 Thermotoga mari...
NP_728790    101 Avknf-----qkkVFVMGEKGVHFELEkfgicslkmseklekp-mhefvteleldpdvgAVIVGrdegfnmakLVRTGsy 174 fruit fly
NP_572760     99 Qsikf-----eglIYIIASQSFKTVLReagfqlldgpnefieesyaslaehifgkepvrAVIIDvdfnltspkILRAHly 173 fruit fly
NP_001040333  99 Ksvtf-----nktVYCVTCTETKRVLEahgfkckegpdlgpey-ygeyiqyleddeeigAVVFDsdfkinlpkMYRAIty 172 domestic silkworm
NP_570021    100 Kkhkp-----gerVYSLMSLEANETLRkhniefeslqvkehlt-aaslvdhlaiekpvgAVLFDihldlsyveLAKAIrh 173 fruit fly
NP_001259468 101 Rsikf-----eglIYCLATSPFKEILVnagfrlaqengsgiitrlkdlheaifsgesvdAVIIDvdfnlsaakLMRAHfq 175 fruit fly
2CFT_A        99 RqrlpgppdapgaVFVLGGEGLRAELRaaglrlagdps-----------agdgaaprvrAVLVGydehfsfakLREACah 167 human
Feature 1                      #                                  #                        ###  #
2OYC_A       168 lr-dpeCLLVATDRDPWHplsdgsrTPGTGSLAAAVETAsgrq-alvvGKPSPYXFECITenfs-idpARTLXVGDRlET 244 human
2C4N_A       134 v--angARFIATNPDTHGrg----fYPACGALCAGIEKIsgrk-pfyvGKPSPWIIRAALnkmq-ahsEETVIVGDNlRT 205 Escherichia coli
3QGM_A       141 c--lrgIRYIATNPDRIFpae-dgpIPGTGXIIGALYWXtgrepdvvvGKPSEVIXREALdilg-ldaKDVAVVGDQiDV 216 Archaeoglobus f...
1PW5_A       137 l--rkgKFYIATHPDINCpsk-egpVPDAGSIXAAIEAStgrkpdliaGKPNPLVVDVISekfg-vpkERXAXVGDRlYT 212 Thermotoga mari...
NP_728790    175 ll-npdVIFLGTCLDAAYpignnrvMVGAGATLAAMKAYtgrs-plvlGKPNPWMASTLMqsga-ikpETTLMVGDTlQT 251 fruit fly
NP_572760    174 lr-hpeCMLIEGATDRLLpvakevnIVGPGAFASILVEAsgkq-pitlGKPGRELGDLLVehyqivqpSRVLMIGDMlAQ 251 fruit fly
NP_001040333 173 lk-rpeVLFINGATDRMVpmktgllGLGTGVFTDLVTVEvkre-pvllGKPGRVFGEFAMkragitdpSRVLFIGDMiAQ 250 domestic silkworm
NP_570021    174 lqenddCQLIAGGSDVIMplaenlnVAGFFDFLEHVKRYtqre-atflGKPSPILGEMFGemfeirdcKRCIFIGDTlVQ 252 fruit fly
NP_001259468 176 lq-npkCLFLAGAADALIpfg-kgeIIGPGAFIDVVTQAvgrq-pitlGKPGEDLRKLLLerhreippSRVLFVGDSlAS 252 fruit fly
2CFT_A       168 lr-dpeCLLVATDRDPWHplsdgsrTPGTGSLAAAVETAsgrq-alvvGKPSPYMFECITenfs-idpARTLMVGDRlET 244 human
Feature 1        #                                                 
2OYC_A       245 DILFGHRcGXTTVLTLTGVSRLEeaqayla---agqhdlvPHYYVESIAD 291 human
2C4N_A       206 DILAGFQaGLETILVLSGVSSLDdids---------mpfrPSWIYPSVAE 246 Escherichia coli
3QGM_A       217 DVAAGKAiGAETVLVLTGVTTREnldqxi-----erhglkPDYVFNSLKD 261 Archaeoglobus fulgidus
1PW5_A       213 DVKLGKNaGIVSILVLTGETTPEdler---------aetkPDFVFKNLGE 253 Thermotoga maritima
NP_728790    252 DMHFASNcGFQSLMVGSGVNTPKevqqiieegdpkkkilvPDTYLPSLGH 301 fruit fly
NP_572760    252 DVSFGRQcGFQTLLVLSGGCSKEellaet------dpqriPDYYADSVAD 295 fruit fly
NP_001040333 251 DVSLGKAvGFNTLLVLTNTTKEEmlsh----------tirPDYYAASLGS 290 domestic silkworm
NP_570021    253 DVQFGKAcGFQSLLVLSGCLTKEdmlna-------pveaqPDYYADSLAD 295 fruit fly
NP_001259468 253 DIGFARAsGYQTLLVLTGGTKLEdvqrlp-----idhsqmPDYLADCLGQ 297 fruit fly
2CFT_A       245 DILFGHRcGMTTVLTLTGVSRLEeaqayla---agqhdlvPHYYVESIAD 291 human

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