1VTN,5X07


Conserved Protein Domain Family
FH_FOXA

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cd20015: FH_FOXA 
Click on image for an interactive view with Cn3D
Forkhead (FH) domain found in the Forkhead box protein A (FOXA) subfamily
The FOXA subfamily includes three winged helix transcription factors, FOXA1 (also called hepatocyte nuclear factor 3-alpha or transcription factor 3A), FOXA2 (also called hepatocyte nuclear factor 3-beta or transcription factor 3B), and FOXA3 (also called hepatocyte nuclear factor 3-gamma or transcription factor 3G). FOXA1 is essential for epithelial lineage differentiation and has been found to be upregulated in numerous cancers. FOXA2 controls cell differentiation. It is a key transcriptional regulator that maintains airway mucus homeostasis and may also have an important role in bone metabolism. FOXA3 acts as an essential transcriptional regulator engaged in adipogenesis and energy metabolism. This subfamily also includes Xenopus tropicalis FOXA4, Drosophila melanogaster protein fork head (dFKH), and similar proteins. FOXA4 is only present in amphibians, where it is required for the correct regionalization and maintenance of the central nervous system. dFKH promotes terminal as opposed to segmental development. In the absence of dFKH, this developmental switch does not occur. The FH domain is a winged helix DNA-binding domain. FOX transcription factors recognize the core sequence 5'-(A/C)AA(C/T)A-3'.
Statistics
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PSSM-Id: 410789
Aligned: 10 rows
Threshold Bit Score: 202.085
Created: 17-Dec-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1VTN; Homo sapiens FOXA3 binds DNA through its Forkhead domain, contacts at 4A.
  • Citation:PMID 8332212
  • Structure:5X07; Homo sapiens FOXA2 binds DNA through its Forkhead domain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ##                 #                   #  ## ##  #      #          ## #     
1VTN_C         3 KPPYSYISLITMAIQQApgKMLTLSEIYQWIMDLFPYYRENqqRWQNSIRHSLSFNDCFVKVArsPDKPGKGSYWALHps 82  human
5X07_F         5 KPPYSYISLITMAIQQSpnKMLTLSEIYQWIMDLFPFYRQNqqRWQNSIRHSLSFNDCFLKVPrsPDKPGKGSFWTLHpd 84  human
P14734       210 KPPYSYISLITMAIQNNptRMLTLSEIYQFIMDLFPFYRQNqqRWQNSIRHSLSFNDCFVKIPrtPDKPGKGSFWTLHpd 289 fruit fly
P55317       170 KPPYSYISLITMAIQQApsKMLTLSEIYQWIMDLFPYYRQNqqRWQNSIRHSLSFNDCFVKVArsPDKPGKGSYWTLHpd 249 human
Q6P839       119 KPPYSYISLITMAIQQApnKMMTLNEIYQWIIDLFPYYRQNqqRWQNSIRHSLSFNDCFVKVPrsPEKPGKGSYWTLHpe 198 tropical clawed...
AAC06364      89 KPPYSYISLICMAIQQSpaKRLTLNEIYDWIRQLFPYYRQNqqRWQNSIRHSLSFNDCFVRVPrsPDSPGKGSYWALHpd 168 zebrafish
AAT74646     131 KPPYSYISLITMALQSSpnKMMTLSEIYNWIMDLFPFYRQNqqRWQNSIRHSLSFNDCFVKVPrsADKPGKGSYWSLHpd 210 vase tunicate
XP_006003523 137 KPPYSYISLITMAIQQSpsKMLTLNEIYQWITDLFPYYRQNqqRWQNSIRHSLSFNDCFVKVPrsPEKPGKGSYWALHpe 216 coelacanth
XP_007884334 114 KPPYSYISLITMAIQQSasKMLTLNEIYQWIMDLFPYYRENqqRWQNSIRHSLSFNDCFVKVPraPDKPGKGSYWALHpd 193 elephant shark
Q17381       236 KPPYSYISLITMAIQKSnsRQLTLSEIYNWIMDLFPYYQNNqqRWQNSIRHSLSFNDCFVKVArsPDKPGKGSFWTLHeh 315 Caenorhabditis ...
Feature 1                  ### ## 
1VTN_C        83 sGNMFENGCYLRRQKRF 99  human
5X07_F        85 sGNMFENGCYLRRQKRF 101 human
P14734       290 sGNMFENGCYLRRQKRF 306 fruit fly
P55317       250 sGNMFENGCYLRRQKRF 266 human
Q6P839       199 sGNMFENGCYLRRQKRF 215 tropical clawed frog
AAC06364     169 sGNMFENGCYMRRQKRF 185 zebrafish
AAT74646     211 aGNMFENGCYLRRQKRF 227 vase tunicate
XP_006003523 217 sGNMFENGCYLRRQKRF 233 coelacanth
XP_007884334 194 sGNMFENGCYLRRQKRF 210 elephant shark
Q17381       316 cGNMFENGCYLRRQKRF 332 Caenorhabditis elegans

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