Conserved Protein Domain Family
Delta12-FADS-like

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cd03507: Delta12-FADS-like 
The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity.
Statistics
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PSSM-Id: 239584
Aligned: 49 rows
Threshold Bit Score: 168.173
Created: 22-Feb-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative di-iron ligands [ion binding site]
Evidence:
  • Comment:Putative catalytically essential diiron binding histidine residues; based on similarity to stearoyl-CoA desaturase.
  • Comment:Mutation of any one of these eight histidines in stearoyl-CoA desaturase resulted in complete inactivity.
  • Citation:PMID 7947684

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                              #   #                    
BAC90564     46 KAWARLVVNVLLVVLGYAAlal--------npwWWLLPALWIFTGTaltgFFVIAHDCGHRSFstrRRINDIVGhvmLLP 117 Gloeobacter viol...
BAB50163     30 RSAVELAITLIPFATLWALssaa------yaygHWWGLILILPAAGflvrIFMIQHDCGHGSFfanRYADDWIGralGVL 103 Mesorhizobium lo...
AAQ00253     24 RAFWQVSTTIIPVALLWILiawidqssfktpfrALGLIPVLAILTLlssrAFSLMHDCGHGSLfrsRRLNRITGfllGTL 103 Prochlorococcus ...
CAE08211     31 VAAWQIFNTIIPLILCSIAicnltg--nltlesVVLTPLLFALIILflsrSFSLMHDCGHHSLfrsKTSNRIAAfalSLV 108 Synechococcus sp...
YP_004557    23 RSLRQVADTLLPLLALFYLahka------lsvsLLLALALDFVAALflvrLFILQHDAGHGSFfpkKWMNDLLGffaGVL 96  Thermus thermoph...
AAV95589     16 RLASLSYFGTFAVYFTALYlait------yvghWYVLIPAGVVFAFaavrLYVLQHDCGHHSLfetRNQNEIAGhvlSPF 89  Silicibacter pom...
ZP_00515010  18 RATYQILNTVVPYVLLWILavkv------asisLWLLPPIIVLLILfslrCFSLMHDCGHYSLfqsKSANRIFGfvlGVI 91  Crocosphaera wat...
ZP_00556543  35 RLAAVGYCLTFVVFGLSLTlall------awpnPWLMAPLIVVNAFagvrLYVLQHDAGHNSLfstSRRNTWAGhglSVF 108 Jannaschia sp. CCS1
ZP_00864873  32 RSVVEILITVIPFVLLWGVawsa------qnagYWIGLIAVVPAAGflvrLFMIQHDCSHGSFfrsRRANNWVGrviGVL 105 Alkalilimnicola ...
ZP_01002068  20 RSSFELAVSLIPFILLWVLavwv------sqfsYIGALLISALNGLfllrLFCIQHDCGHGSFfgnRKVSDWIGralGVV 93  Loktanella vestf...
Feature 1                  #  ##                                                                
BAC90564    118 LLYPFHGWRIKHNqHHTFTNqi----emDNAWRpmsvaeyralspgvragyrfargigwwfasaVHQLNLHFKpslfkpk 193 Gloeobacter viol...
BAB50163    104 TLTPYDCWRRAHAtHHASAGnldergmgDIRTLtvaeyrqlswrgrl---ayrlyrhplvmfglGPIWLFIFSqrlpigm 180 Mesorhizobium lo...
AAQ00253    104 NAIPQYPWSRDHAfHHRHNGnwev-yrgPVDVItledyqalskinqf----lysisrhwlmlfpGGFFYLVIKprltlin 178 Prochlorococcus ...
CAE08211    109 HAMPHHPWSRGHAfHHKHNGnwnr-yrgPSALTtlreyktrniysqf----iyqflrhplmllpGGFYYLVVKpraalll 183 Synechococcus sp...
YP_004557    97 TLVPYHHWQLSHArHHATSGnldkrgvgDIYTMtleeylkatpgerl---ryrlyrnpfvmfflGPIYVFMLSyrlplgy 173 Thermus thermoph...
AAV95589     90 TFAPFEVMKQNHNlHHAGVGnlehretgEIHTMtlrewqaagwrqrl---vyrlyrnpfiliplGAAFTYFIRyrwpkna 166 Silicibacter pom...
ZP_00515010  92 NAIPQYGWSRDHAyHHKTNGdwer-yrgVADFLsteefskldpfnqr----lyellphplmaipGGFFYLAIKprlilim 166 Crocosphaera wat...
ZP_00556543 109 TLTPFAVMQHNHNeHHSHLGnleerhstEIFTMtlrewqeagiwkrl---iyrlyrnpflmvpfGGIFTYAIAyrwpkna 185 Jannaschia sp. CCS1
ZP_00864873 106 TLTPFDLWRHSHAtHHATSGnldrpnigGIETLtvreyqalprlhrl---ryrlyrhplvlfgiGPVYLFLLAnrlpfgf 182 Alkalilimnicola ...
ZP_01002068  94 TLTPYDVWRRTHSiHHSHAGdldqrgigDVMTLtveeyhqrtpfgrf---lyrayrhplvmfglGPTYIFFLQnrmphgr 170 Loktanella vestf...
Feature 1                                                                                       
BAC90564    194 dradirlsstav----------------------------------------iafacvlfpallwmggpwaVIQFWLMPW 233 Gloeobacter viol...
BAB50163    181 mrggltpwvssmt---------------------------------------tnlaialaaalliwavgpgAFLVVHLPI 221 Mesorhizobium lo...
AAQ00253    179 aiahfiwsilvelcnkllkrdfanlfsfstrfqanysgygnssgelidliannviviiswilmsrwlgaglFWSCYSIIM 258 Prochlorococcus ...
CAE08211    184 glieliykavanglrelskgkifniysfisn---hkssffytkeegydtlansicvalawywigsaighwhFWILYSSIM 260 Synechococcus sp...
YP_004557   174 gsekpsvrnsval---------------------------------------tnlflvllwtgiylgfglkTLLLVYLPI 214 Thermus thermoph...
AAV95589    167 trfgargvvlhn-----------------------------------------lsivafltllwalagmtgFWVWLGFSF 205 Silicibacter pom...
ZP_00515010 167 evyefiqhiftdfkkgsefnlaqtisahq-------skhwqsatefwdlllnnicvvgswiflshlwgvglFWSIYSITL 239 Crocosphaera wat...
ZP_00556543 186 akvapfqviahn-----------------------------------------lglaawifalwmiagapaLIIYASTIF 224 Jannaschia sp. CCS1
ZP_00864873 183 mrsgwmpwvstmg---------------------------------------tnaaialvvagmiwlvglgPFLLVQLPI 223 Alkalilimnicola ...
ZP_01002068 171 mqreskywvsamg---------------------------------------tnlavavlltvigyvggfaALFLVFLPT 211 Loktanella vestf...
Feature 1                                                                #  ##          
BAC90564    234 LVYHFWMs-tFTLVHHTHpdipfypaatwtpvtgqlfstihcvyPAWVEFLchdINVHIPHHVSTaIPSYNL 304 Gloeobacter violaceus PC...
BAB50163    222 VILAGSAgiwLFYVQHQFeetewakdddwefqhaalhgssyydlPPVLNWFtgnIGVHHVHHLSAkVPGYRL 293 Mesorhizobium loti MAFF3...
AAQ00253    259 TASAAIFi-cIFFVQHNFegsyangsnewsailgavdgssnldiPRLLNWFladISFHSMHHLCDrIPNYNL 329 Prochlorococcus marinus ...
CAE08211    261 SVSASIMi-aVFFVQHNFpgsyasgdedwsyfkgaiegssflimPRVLNWFtadIAYHHVHHLSErIPNYRL 331 Synechococcus sp. WH 8102
YP_004557   215 QYFAGMVgifLFYVQHQFedaywehdprwehlkaamegstylklPRVLQWLtgnIGFHHIHHLAPkIPNYLL 286 Thermus thermophilus HB27
AAV95589    206 LGGMLGVf--LVYLQHNFedtywdrrpdldpqlaalqgssaldfGWWFDTAvacITLHDIHHFNArIPSYRL 275 Silicibacter pomeroyi DSS-3
ZP_00515010 240 SCSATIFi-wLFFVQHIFegayahktadwnyilgavqgssylelPAILRWFtadIGYHNIHHLCErIPNYHL 310 Crocosphaera watsonii WH...
ZP_00556543 225 AASCIGVl--LVYLQHNFedtwwdrkpslnparaalqgssaldlGWWFDLAvanITYHDIHHFNAnIPSYRL 294 Jannaschia sp. CCS1
ZP_00864873 224 TLLGAVIgvwLFYVQHQFedtywrhqeewsfdeaavhgsshyvlPGILRWFsanIGVHHVHHLCSrIPSYRL 295 Alkalilimnicola ehrliche...
ZP_01002068 212 TLIAASIgvwLFYVQHQFetthwdaaddwqlhdaalhgsshydlPPILRWFtanIGIHHVHHLYSrIPFYRL 283 Loktanella vestfoldensis...

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