Conserved Protein Domain Family
CD_CEC-4_like

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cd18961: CD_CEC-4_like 
chromodomain of Caenorhabditis elegans chromodomain protein 4, and similar proteins
CHRomatin Organization Modifier (chromo) domain of Caenorhabditis elegans CEC-4, and similar proteins. CEC-4 is a perinuclear heterochromatin anchor, it mediates the anchoring of H3K9 methylation-bearing chromatin at the nuclear periphery in early to mid-stage embryos. It is necessary for anchoring, but does not affect transcriptional repression. CEC-4 contributes to the efficiency with which muscle differentiation is induced following ectopic expression of the master regulator, HLH-1 (MyoD in mammals). A chromodomain is a conserved region of about 50 amino acids, found in a variety of chromosomal proteins, and which appears to play a role in the functional organization of the eukaryotic nucleus. The chromodomain is implicated in the binding, of the proteins in which it is found, to methylated histone tails and maybe RNA. A chromodomain may occur as a single instance, in a tandem arrangement, or followed by a related chromo shadow domain.
Statistics
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PSSM-Id: 349317
Aligned: 6 rows
Threshold Bit Score: 88.3124
Created: 26-Mar-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #####                 # ####      # #### ##    #  ##  
NP_501231  87 YAVERVLAHRKvk---gSPLYLVQWKGYphpvwnSEMWEEDLDNCKDLLAAYKK 137 Caenorhabditis elegans
NP_497198 114 YVVEKIVAHRYpndrlnQPLYLVMWRGFpdpvsnTEMWGEELENCQELLDAYNE 167 Caenorhabditis elegans
CDJ91600   70 YEVEDILSHTIkn---gKIIYRISWVGYpg--yiSEMTEEDLVNCGELLKEYKL 118 barber pole worm
KHJ89709    2 YEVEAILSHEVvd---dEVVYKVSWVGYpg--eiTELLEEDLKNCGEMLEAYKR 50  Oesophagostomum dentatum
CDJ81027   38 YEVEAIISHVVvd---nEPLYRVTWVGYpg--evTELTEDELSNCTELLQAYKD 86  barber pole worm
PIC31473  479 YVVEKIVSHKIvk---gKVLYTVMWEGYpkpkdySEMEEKALKDCPKILKAYKD 529 Caenorhabditis nigoni

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