4ATI


Conserved Protein Domain Family
bHLHzip_MITF_like

?
cd11397: bHLHzip_MITF_like 
Click on image for an interactive view with Cn3D
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family
The MITF (also known as microphthalmia-TFE, or MiT) family is a small family that contain a basic helix loop helix domain associated with a leucine zipper (bHLHZip). The MITF family comprises four genes in mammals (MITF, TFE3, TFEB, and TFEC); each gene has different functions. MITF is involved in neural crest melanocytes development as well as the pigmented retinal epithelium. TFEB is required for vascularization of the mouse placenta. TFE3 is involved in B cell function. TFEC regulates gene expression in macrophages. The MITF family can form homodimers or heterodimers with each other but not with other bHLH or bHLHzip proteins.
Statistics
?
PSSM-Id: 381403
Aligned: 21 rows
Threshold Bit Score: 101.216
Created: 14-Nov-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences.
  • Structure:4ATI; Mus musculus Mitf binds DNA, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                ## ##  ##   #                           ##                          
4ATI_A        23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKsn-------dpDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91  house mouse
NP_001071764 210 KDRIKKDNHNIIERRRRYNINDRIRELGHLVPKss-------dpELRWNKGSILKAAVDYIQHLQNDQQKHRALEQ 278 vase tunicate
BAB79633     196 QDRVKKDNHNRIERKRRYNINDRIKELGSLIPRsn-------dpDIRWNKGSILKTTVDYVRDLQKRVAKLDQSER 264 Halocynthia roretzi
AVX48078     219 KKRKKKDNHNIVERRRRFHINDRIKELQTLLPYit-------dtNVRQNKGSVLKAAIEYIKKLRKEHERIEQMDK 287 Meretrix petechialis
NP_001023411 260 RDRRKKDIHNMIERRRRYNINDRIKELGQMLPKnt-------seDMKLNKGTILKASCDYIRVLQKDREQAMKTQQ 328 nematode
ADX20705     278 KDRQKKDNHNMIERRRRFNINDRIKELGTLIPKsp-------dpDQRQDKGSILKMSVDYIRKLQREREQHMKAEE 346 Apostichopus japonicus
NP_001161587 287 KDRQKKDNHNMIERRRRFNINDRIKELGTLLPTng-------dpDQRINKGTILKSSVDYIRRLRKDASKMKQEQE 355 Saccoglossus kowale...
EFX88126       7 KDRQKKDNHNMIERRRRFNINDRIKELGTLLPKsndpy-ydcfrDVRQNKGGILKASVDYIRRLRHDRDRLAQNEA 81  common water flea
XP_023933072 274 KERQKKDNHNLIERRRRFNINDRIKELGTLLPKgcdpdfhyrekDMRQNKGTILKASVDYIRKLRKDHEKLKMMEE 349 Lingula anatina
XP_011406372 289 KERIKKNNHNMIERRRRFNINDRIKELGMLLPSse--------sEARQNKGSILKASVDYIRKLQRDVERLKIQDA 356 Amphimedon queensla...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap