Conserved Protein Domain Family
LIM1_MLP84B_like

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cd09404: LIM1_MLP84B_like 
The LIM domain of Mlp84B and Mlp60A
The LIM domain of Mlp84B and Mlp60A: Mlp84B and Mlp60A belong to the CRP LIM domain protein family. The Mlp84B protein contains five copies of the LIM domains, each followed by a Glycin Rich Region (GRR). However, only the first LIM domain of Mlp84B is in this family. Mlp60A exhibits only one LIM domain linked to a glycin-rich region. Mlp84B and Mlp60A are muscle specific proteins and have been implicated in muscle differentiation. While Mlp84B transcripts are enriched at the terminal ends of muscle fibers, Mlp60A transcripts are found throughout the muscle fibers. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188788
Aligned: 11 rows
Threshold Bit Score: 89.4682
Created: 22-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #  #                 #  #  #  #                 #  # 
ADG58103   43 KCPKCGKSVYAAEEKvAGGFKFHKMCFKCGMCNKMLDStnSAEHEGELYCKNCH 96  Lycoris longituba
Q24400     11 KCPRCGKSVYAAEERlAGGYVFHKNCFKCGMCNKSLDStnCTEHERELYCKTCH 64  Drosophila yakuba
T25858     35 KCPKCGKSVYAAEEMsAGGYKWHKFCFKCSMCNKLLDSmsCCEHQAQLFCKQCH 88  nematode
ACO15499   10 KCPKCGRSVYAAEEKiAGGHKWHKSCFKCETCNKFLDSttCAEHAKKLYCKTCH 63  Caligus clemensi
NP_498300  10 KCPKCGKSVYAAEEMsAGGYKWHKFCFKCNMCNKLLDSctVAPHEAELYCKQCH 63  nematode
ACR08642   10 KCPVCGKSVYAAEERlAGGYAYHKNCFKCSVCNKSLDStnCAEHDREIFCKLCH 63  Drosophila silvestris
ACL83203   10 KCPACGKSVYAAEERvAGGYKFHKTCFKCSMCNKALDStnCTEHEKELFCKNCH 63  fruit fly
ACO10369    9 RCPNCEKVVYGAEGFpAGGKRFHKKCFKCKTCDRRLDStsVRCHEGFIYCRPCH 62  Caligus rogercresseyi
ACJ65685   10 KCPKCDKSVYAAEERlAGGFKWHKVCFKCDTCNKALDStnANCHEAHLYCRSCH 63  Haliotis discus discus
ABB73031   10 ICPACGSAVYAAEEKlGAGKKWHKMCFKCGLCNKLLESttVAEHEGRVYCKGCH 63  edible mussel
ABX75381   10 KCPKCGKSVYAAEEMlAAGAKWHKTCFKCGLCHKRLDStnATEHDGLLYCKQCY 63  Lycosa singoriensis

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