1H6F


Conserved Protein Domain Family
T-box_TBX2_3-like

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cd20188: T-box_TBX2_3-like 
Click on image for an interactive view with Cn3D
DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
This subfamily includes the T-box transcription factors TBX2 and TBX3 and similar proteins. TBX2 is an oncogenic transcription factor implicated in developmental processes, including coordinating cell fate, patterning and morphogenesis of a wide range of tissues and organs. It is overexpressed in several cancers, including melanoma and breast, and plays a key role during cardiac development. TBX2 is a negative regulator of promyelocytic leukemia protein (PML) function in cellular senescence, and it interacts with HP1 to recruit a repression complex to EGR1-responsive promoters to drive the proliferation of breast cancer cells. TBX3 has also been implicated in oncogenesis in breast cancer and melanoma. The tbx3 gene is downregulated by PML. TBX3 directly represses TBX2 under the control of the PRC2 complex in skeletal muscle and rhabdomyosarcoma. Also included in this family is the Drosophila melanogaster optomotor-blind protein (Omb, also known as lethal(1)optomotor-blind, or L(1)omb, or protein bifid) which controls many developmental processes such as wing, eye, and abdominal tergites and optic lobes, and induces epithelial cell migration and extrusion in vivo. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. The founding member of the T-box family is brachyury (also known as TBXT, or T). T-box family members share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410314
Aligned: 23 rows
Threshold Bit Score: 370.223
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:the two TBX3 T-box monomers dimerize upon DNA binding; they appear to bind as non-associating monomers, the T-box dimer is kept in register by the DNA
  • Structure:1H6F; Homo sapiens TBX3 binds DNA, contacts at 4A.
  • Citation:PMID 9349824

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     ##                                                 
1H6F_A         3 DDPKVHLEaKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEM 82  human
2501133       59 DDPKVELDeRELWQQFSQCGTEMVITKSGRRIFPAYRVKISGLDKKSQYFVMMDLVPADEHRYKFNNSRWMIAGKADPEM 138 Caenorhabditis ...
BAE06821     122 DDPQVDLDnMELWEQFHRRGTEMVITKTGRRMFPSFKVKVSGLSKTAKYIMLMDIVSADDCRYKFHNSRWMVAGKADPEL 201 vase tunicate
XP_015762428  84 ENVEVSLEnKDLWQRFYEEKTEMVITKAGRRMFPPIKARVSGLDPRAKYFLLMDIVPADDCRYKFHNCRWMVAGKADPEM 163 Acropora digiti...
CAD70270     121 EDIKVTLEnKDLWDKFHNLGTEMVITRSGRRMFPVIKVNVTGLDSREKYIMMMDIVPADDYRYKFHNCAWTVGGKADTEI 200 Trichoplax adha...
ABL68080      96 SEVTLELEkKELWQSFCKHGTEMVITKAGRRLFPALKCKVSGLDPNAKYAFLVDVVPADDCRYKFSNCEWVVAGKADPEP 175 sea walnut
ACN66456     125 DDPKVDLEgKELWERFHSLGTEMVITKSGRRIFPPYKVRVSGLDKRAKYILLMDIVAVDDCRYKFHNSRWMVAGKADPEM 204 Neanthes arenac...
XP_013379453  91 DDPKVELEgRDLWDQFHNIGTEMVITKSGRRMFPAYKVKVSGLDKRAKYILLMDIVAVDDCRYKFHNSRWMVAGKADPEM 170 Lingula anatina
PAA89413     169 DDPKVELVeKELWDQFHGFGTEMVITKSGRRMFPPFKVKVAGLDKRAKYIMLMDIVPVDDCRYKFHNSRWIVAGKADPEM 248 Macrostomum lig...
AWV91618      80 EDPQVELEyKDLWDQFHTYGTEMVITKSGRRMFPSFKVKVSGLDKRSKYIFLMDIVAADDCRYKFHNSRWMVAGKADPEM 159 amphioxus
Feature 1                                    #  #                 ##                             
1H6F_A        83 PKRMYIHPDSPATGEQ-WMSKVVTFHKLKLTNNISDKHGFTIL-----NSMHKYQPRFHIVRANDILKLPYSTFRTYLFP 156 human
2501133      139 PKTLYIHPDSPSTGEH-WMSKGANFHKLKLTNNISDKHGYTIL-----NSMHKYQPRLHVVRCADRHNLMYSTFRTFVFR 212 Caenorhabditis ...
BAE06821     202 PKRMYIHPDSPATGEQwMNRPGVSFHKLKLTNNIADPHGHTIL-----NSMHKYQPRFHVVRCGDLAKLPYCAFRTYVFK 276 vase tunicate
XP_015762428 164 PKPLYMHPDSPSTGAQ-WMQKTISFHKMKLTNNIADKYGYTIL-----NSMHKYQPRIHVVRADETYKHPYNNFKTFSFP 237 Acropora digiti...
CAD70270     201 VPRMYIHPDSPSTGYQ-WMQKPISFHKIKLTNNADDKHGYTIL-----NSMHKYQPRIHIIHANDLFQYPHNTMKTFVFK 274 Trichoplax adha...
ABL68080     176 PKRMYVHPESPNTGAH-WMKKIISFHKLKMTNNVSDTSGYAIL-----NSMHRYQPRVHIVQCDDIYKIPWCAFRTMIFQ 249 sea walnut
ACN66456     205 PKRMYIHPDSPSTGEQ-WMQKVVSFHKLKLTNNISDKHGFVSAti--lNSMHKYQPRFHLVRANDILKLPYSQFRTYVFK 281 Neanthes arenac...
XP_013379453 171 PKRMYIHPDSPATGEQ-WMQKIVSFHKLKLTNNISDKHGFTIL-----NSMHKYQPRFHLVRANDILKLPYSAFRTYVFK 244 Lingula anatina
PAA89413     249 PKRIYIHPDSPSTGEQ-WMQKIVSFHKLKLTNNISDKHGFTIL-----NSMHKYQPRFHLVRAADIMKLPFSTFRTFVFN 322 Macrostomum lig...
AWV91618     160 PKRMYIHPDSPATGEH-WMSKTVSFHKLKLTNNISDKHGFVSLpqtilNSMHKYQPRFHIVKTNDIMKLPYCHFRTYVFR 238 amphioxus
Feature 1               ####    #  ##  #######  
1H6F_A       157 ETEFIAVTAYQNDKITQLKIDNNPFAKGFRD 187 human
2501133      213 ETEFIAVTAYQNEKVTELKIENNPFAKGFRD 243 Caenorhabditis elegans
BAE06821     277 EMQFIAVTAYQNEKITQLKIDHNPFAKGFRD 307 vase tunicate
XP_015762428 238 ETVFIGVTAYQNEKITKLKIDNNPFAKGFRE 268 Acropora digitifera
CAD70270     275 ETEFIAVTAYQNEKITHLKIYNNPFAKGFRD 305 Trichoplax adhaerens
ABL68080     250 ETEFFAVTAYQSEKITQLKIEHNPFAKGFRE 280 sea walnut
ACN66456     282 ETEFIAVTAYQNEKITQLKIDNNPFAKGFRD 312 Neanthes arenaceodentata
XP_013379453 245 ETAFIAVTAYQNEKITQLKIDHNPFAKGFRD 275 Lingula anatina
PAA89413     323 ETAFIAVTAYQNEKITQLKIDHNPFAKGFRD 353 Macrostomum lignano
AWV91618     239 ETAFIAATAYQNEKITQLKIDHNPFARGFRD 269 amphioxus

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