6IIQ,3QBY,4FU6,5XSK,5XSK,1N27


Conserved Protein Domain Family
PWWP_HRP

?
cd05834: PWWP_HRP 
Click on image for an interactive view with Cn3D
PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family
The HRP family includes hepatoma-derived growth factor (HDGF), and HDGF-related proteins (HRPs). HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It is a prognostic factor in several types of cancer. HDGFL1 is also called PWWP domain-containing protein 1 (PWWP1). Its biological function remains unclear. HDGFL2, also called HDGF-related protein 2 (HRP-2), or hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. HDGFL3, also called HDGF-related protein 3 (HRP-3), enhances DNA synthesis and may play a role in cell proliferation. The family also includes PC4 and SFRS1-interacting protein (PSIP) and similar proteins. PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. Members of the HRP family contains a PWWP domain, which is necessary for DNA binding.
Statistics
?
PSSM-Id: 438959
Aligned: 53 rows
Threshold Bit Score: 96.4685
Created: 27-Nov-2007
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:5XSK; Rattus norvegicus HDGF swapped dimer in complex with DNA, contacts at 4A
  • Structure:6IIQ: Human HRP3 PWWP domain binds a 16-bp TA-rich DNA; contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ## #                                                          # #    
6IIQ_A        10 YKAGDLVFAKMKGYPHWPARIDELpegav-kppaNKYPIFFFGTHETAFLGPKDLFPYkey-----kdkFGKSNKRKGFN 83   human
5XSK_A        30 YKCGDLVFAKMKGYPHWPARIDEMpeaav-kstaNKYQVFFFGTHETAFLGPKDLFPYees-----kekFGKPNKRKGFS 103  Norway rat
NP_651768     10 YSIGDLVFAKVKGYPPWPAKITKSnn-------nKKYNVYFYGTGETANIKLEDLFPYasnk---erfaTEKIMKRAKFI 79   fruit fly
OXA52285       5 FAANDLVFAKLKGFPPWPAKIMERaggt---gkdEKYRIMFYGTHDEATVKWDQIFLYtadt----rakYGKPMRKSHFK 77   Folsomia candida
XP_023339493   7 FQPGELVFAKVKGYPPWPARITGMss-------kDRYKIYFYGTYETASLKNEDIWRYsqei---kekfAPKNMKRKGYP 76   Eurytemora aff...
XP_023345615   5 FSVGALVFAKVRGFPPWPARITRIte-------nGKYAVFFYGTYENATLKANEIFEFsken---qasfIPKNIHRKNYG 74   Eurytemora aff...
EDW75697      50 GHGGDLVFAKLKGYSIWPAKITKLn--------kEQYHVRLYGNPKTGIVTVDNLFAYvehk---ekfaTDKLLRRKNFR 118  Drosophila wil...
XP_015369900   7 FAVKDKVFVKRRGYPAWPALIIGIkanp---eseLVYTVYFYGTGNYGECKPELLCLYeenky-klgkpRRKQKKLKQLV 82   Russian wheat ...
XP_026677928  23 FHVYDKVFARLRGYPPWPAKITNIkvdakskslkSKCEVYFYGSNQIGQCAFTDIHDYeankerfkdicQSSKNLKNTFQ 102  Asian citrus p...
XP_008469118  11 FQLNDRVFAKMKRYPIWPAKIIEIld-------nEKYKVFFYGTHDCAIVPTCNVTKYesi------knNIPKSKLKSYM 77   Asian citrus p...
Feature 1                 
6IIQ_A        84 EGLWEIENN 92   human
5XSK_A       104 EGLWEIENN 112  Norway rat
NP_651768     80 EAIDQIESA 88   fruit fly
OXA52285      78 EAMIEIDAD 86   Folsomia candida
XP_023339493  77 EGLDQIENT 85   Eurytemora affinis
XP_023345615  75 KGIDELKYT 83   Eurytemora affinis
EDW75697     119 NGIAEIEND 127  Drosophila willistoni
XP_015369900  83 EALIQIEND 91   Russian wheat aphid
XP_026677928 103 LALEEIEND 111  Asian citrus psyllid
XP_008469118  78 TAVKEIKQD 86   Asian citrus psyllid

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap