3K6O


Conserved Protein Domain Family
NigD_C

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pfam17415: NigD_C 
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NigD-like C-terminal beta sandwich domain
This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroides species. Proteins in this family are typically between 234 and 260 amino acids in length. These proteins possess an N-terminal lipoprotein attachment site. The family includes NigD a protein found in the Nig operon that encodes a bacteriocin called nigrescin. It has been suggested that NigD may be the immunity protein for nigrescin (NigC) because it is directly downstream. This entry represents the C-terminal beta-sandwich domain of NigD.
Statistics
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PSSM-Id: 435906
Aligned: 60 rows
Threshold Bit Score: 89.6241
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K6O_A        89 KIIGLNPD-NXDSI-GNXKVQIKDXWPSDD--YLNVRF----XLNFpsPQKPILNLVVNEXip--wtKDGYAHLELRYNN 158 Phocaeicola vul...
CCX62329     105 APIPLPVDkFPEGV-KTDPVDVLSVWMGRN--YLNLMLtvkaQ-----HGKHKFHYVEDRVdvdveaHRSSVELTLYHDD 176
WP_118026158 102 AVKPVTVDkLPEATaKTDPLDIQSVWKSGN--YINLILltmaK-----EKSHIFHFIDEGIsdn-ndGSRTLHLTLYHNQ 173 Phocaeicola ple...
WP_118400611  99 SISPVDKNnFSPGEiSTDPLDIQSIWRSGN--YLNLILlplvK-----EGKHIYMAVETELtrh-sdGHQTLSLILHHDR 170 Phocaeicola cop...
WP_018711685  99 SMLPKPASaFTDGV-RTDPLDIQSIWLSGR--YLNMVLlpmaK-----DKSHIYHFVENGLtqr-teGGNQLELTLYHDQ 169 Phocaeicola bar...
WP_005850825 100 SPVPLSESkFKE-I-KTDPVAIQSIWRGGN--YLNLILqvkvK-----DQKHGYHFIENKLen--kdGEQTLYLTLYHDR 168 Phocaeicola
CDC00263     101 SMNPLAEKaFKGQI-KTDPVDIQSIWLSGN--YVNMILlvqyK-----DQTHAYHFIDEGFtan-edGTRTLNLRLYHDR 171
CDA74985      98 SPNPLRPEsFKSGV-KTDPVEIQSIWLSGN--YLNMVLlipvK-----EEKHSFHFVDEGVeta-adGKNVLNLRLYHDS 168
CCY15201      95 TPRTYAHE-------KADPVEAVSAWAGGG--CVNLRLavrtRn----EGTHYFGCIDRGMtsw-pdGRQTLHLGLYHDQ 160
CCY02147     122 SV-------ENDSV-GTDPLSFEAGWISSDnrWLNLRLsmktGSSSatEQIRQLVAVSLDStymhenGTKEIWLTLRHQQ 193
3K6O_A       159 NGSQ-GRLVPGXVSFKLDDYSPENSELKGIKVLVNPVDGEeKTYIFSY 205 Phocaeicola vulgatus ATCC 8482
CCX62329     177 GGDTpAYSQRAYCSIPLLQYADEGVDTVEVSLHVHSYSGEvKTYTFEY 224
WP_118026158 174 NGDYeAFTRKSYLSIPLWAYEGQLTQGDKVMLRINTYEKGfVSYEFTY 221 Phocaeicola plebeius
WP_118400611 171 NGDEeAFTRKTYLSIPLSTYKGKLQEGDSITLTLNTYQEGmTSRSFAY 218 Phocaeicola coprophilus
WP_018711685 170 NGDYeAFTRKTYLSIPLWEYGDKLGTGDRIILHIRTYQEGeTTREFMI 217 Phocaeicola barnesiae
WP_005850825 169 NNDIeGFNRKVYLSVPLWAYAGKLHKGDKIVFNIRTYKEGmTSRIFYF 216 Phocaeicola
CDC00263     172 KNDYeAFTKQVYLSVPLKKYLQSLQKGDKIRFYLNTYKEQeTYREFDY 219
CDA74985     169 NNDYaAFTNRAYLSVPLHGYKSQLSVGDSVCFRLNTVKQGqVFRKFAL 216
CCY15201     161 GSDPaSFSRTLYVSFDLSPYAASLRAGDTVRVGLPTFEAGtVTRAVVW 208
CCY02147     194 NDVPeYYSMSVYVSIPLSDFPA----GSLINLKTYTYDGI-VNRCFLM 236
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