Conserved Protein Domain Family
SSXRD

?
pfam09514: SSXRD 
SSXRD motif
SSX1 can repress transcription, and this has been attributed to a putative Kruppel associated box (KRAB) repression domain at the N-terminus. However, from the analysis of these deletion constructs further repression activity was found at the C-terminus of SSX1. Which has been called the SSXRD (SSX Repression Domain). The potent repression exerted by full-length SSX1 appears to localize to this region.
Statistics
?
PSSM-Id: 430657
Aligned: 13 rows
Threshold Bit Score: 35.0512
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_005641362 192 PKRGKNSIWAYRLRERKnLVVYEEISDPEEED 223 
XP_011962445 171 LGRKETDMKRYSLRERK-GHVYQEVSEPQDDD 201 
XP_016277715 167 CRRKDVEVHIYSLRERK-YQVYQEMWDPQDDD 197 
1_pfamImport   1 LRRKEIEARSYNLRERT-DRSYEEVSEPQNDD 31  
ELK10079      98 LRRKGVEVKMYSLRERT-GRVYQEVSEPQDDD 128 
Q9NQW5       171 LRRKETEGKMYSLRERK-GHAYKEISEPQDDD 201  human
ELW61807     190 VRRKETKVKMYSLRERK-CGTYKEVHEPQDDD 220 
Q96EQ9       171 LRKKNVEVKMYRLRERK-GLAYEEVSEPQDDD 201  house mouse
EHB09429     163 ERKRKVSVWSKQLREWKnLMVYEEISDPEEED 194 
XP_023374805 159 EKKKGKSVWAHRLRERKnFIIYEEISDPEEED 190 
XP_006527711 130 TGGIQVNVWSHRLRERKyRVIYSEISDPEEEE 161 
XP_027819084 606 SERKTVDVWANRLRKRQ-PVAYEEISDSEEES 636 
XP_017193924 171 LRRKNIEVKMYSFRKRK-SQAYKECSEPQDDD 201 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap