Conserved Protein Domain Family
PHA00452

?
PHA00452: PHA00452 
T3/T7-like RNA polymerase
Statistics
?
PSSM-Id: 222797
Aligned: 40 rows
Threshold Bit Score: 747.233
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
125999968   2 NADLMQAQIELENNYFNGGIARFEASQARHENNGESSQTAWNRRLISEFVAPMAEALQVHKEFYs--KKKGKPSKSLAYL 79 
61806414    3 TTADLEMQERFERKQIKGGLERFRSNTNKLLEKDYASATVFGSSSIETLLPYLVKYIDQKKEDRk-nIPIGRHIHLLPYL 81 
148724458   2 SFDLIARQLQRETEAAELARKRLQDARREANERSYASSNIESRKAIATFLDPIAQRIGERLFTLrrgTGAVDAAEVYKHL 81 
158345171   1 MIDPIEAQMQREKRHSAEATAQHLREVQEALRAGRVDDIPAARRLIARVYEDVRAALEPVVET----KARGPGAALRGWL 76 
158345053   1 -MDLIQQQIAHEEALVGAAQNDARIALEKAIAQGSIDRIPRARIMLMRMLPIVTEAIFAHQEA----KAAGPAAKLRHLL 75 
167600472   1 -MDLIQQQIAHEEALVGAAQNDARIALEKAIAQGSIDRIPRARIMLMRMLPIVTEAIFAHQEA----KAAGPAAKLRHLL 75 
195546732   1 -MDLIQQQIAHEEALVGAAQNDARIALEKAIAQGSIDRIPRARIMLMRMLPIVTEAIFAHQEA----KAAGPAAKLRHLL 75 
225626353   1 -MDLIQQQIAHEEALVGAAQNDARIALEKAIAQGSIDRIPRARIMLMRMLPIVTEAIFAHQEA----KAAGPAAKLRHLL 75 
229604949  10 FEEKAARQERIEETFKTEAIERSRKAVLDALENGRATELTPVQRLLNAAYDGVSARIDELKAS----KTRGVGAKYRGYI 85 
281306683   2 SADQIAAEIQSDADAMVEAAKAHAALIAK----GDIDKLPRGKAVIARMFGDVRASIVAEQEK----KHRGVGAALRGWL 73 
125999968  80 QCVGNEVASYITMKVALDML---------ASGvSYTAIAMTIATRIEDQARFTKLEGAAEKYVAKVLDNLKRNSSKQYQH 150
61806414   82 FSLDSESQGAITAKITFDKLfsp----rkDNS-KVANVVQAIGSALEAECQMRYYESSAPGLFETLKKNYWHQAKGTAYK 156
148724458  82 KNADHHHLALITMKTALDVLgk------dPEP-QIQQLTTAIGRNIQLELRLTYYAEENPELYKQASRFFHAGTGTRQKA 154
158345171  77 RRVPIDTLAVLSIRVVLAHVmrd----taESPaTLQRIGHALGRAIEQEALVQEAYRANALYLDRTWEYLRTAGTTSQRH 152
158345053  76 RIIDAQDLAVMALRAGLSMLin------yPTI-TATKYYTHMGKMLCREIEVRLAFKVNQPYYDRTLDYLKTSRTRSVRH 148
167600472  76 RIIDAQDLAVMALRAGLSMLin------yPTI-TATKYYTHMGKILCREIEVRLAFKVNQPYYDRTLDYLKTSRTRSVRH 148
195546732  76 RIIDAQDLAVMALRAGLSMLin------yPTI-TATKYYTHMGKMLCREIEVRLAFKVNQPYYDRTLDYLKTSRTRSVRH 148
225626353  76 RIIDAQDLAVMALRAGLSMLin------yPTI-TATKYYTHMGKMLCREIEVRLAFKVNQPYYDRTLDYLKTSRTRSVRH 148
229604949  86 RLVSSDVLTVMTLNTLLNNIast----elGMS-SIQSLGTSLGRSVQSEIIAQNAEVVAPAYMNRVYEYLKEHKTRSQSH 160
281306683  74 RELEADVAAVLALRVTMGCVlqtfgthscTPP-TFQRIATAIGREWAMELKVRAAARINPVYYDGAVQRLKDSNTTSQKH 152
125999968 151 GHNVMVAAERKLSEGrpgqepsvTrWIAWPQDDLLAIGMTLLQIMEKSVffeGEPVFFRYNKNDNGGGKvklIPVl-GVA 229
61806414  157 AKSMTTLMNKHEDLEr---------WKPWNRIERIKVGTWFLDCLMESS---EWFERELSMHRGKTQQF-----V--VPT 217
148724458 155 TVIKLKFNREGIE------------WDQWSRVTCHKVGQWLMLAMADVT---GWIERATDRTSGGRKTK---TRI--CYS 214
158345171 153 IQKTMRAVVHNVLEG--------QfDGHLTNAEYIHLGKHGLQACLDA----GLVELQRHGQGAKTNAIy-------VLP 213
158345053 149 IQKTMDALLDAVLPE--------EaRIDLPDGDYLRLGKFIGDPLIQC----GLFEPNRFVGRGGTSVH-----L--EPS 209
167600472 149 IQKTMDALLDAVLPE--------EaRIDLPDGDYLRLGKFIGDPLIQC----GLFEPNRFTGRGGTSVH-----L--EPS 209
195546732 149 IQKTMDALLDAVLPE--------EaRIDLPDGDYLRLGKFIGDPLIQC----GLFEPNRFTGRGGTSVH-----L--EPS 209
225626353 149 IQKTMDALLDAVLPE--------EaRIDLPDGDYLRLGKFIGDPLIQC----GLFEPNRFVGRGGTSVH-----L--EPS 209
229604949 161 ILRTFRAASANVKLE----------TDPWDNTTCFNVGRLLLQCVHDT----GIFEWVQGPK----------GLLyaEPA 216
281306683 153 VRMAMSRVVENSLDGvyds--------dltpTEYMHLGKVGLQACMDA----GLVDVVRTTTRSGHHVE-----Y--ELT 213
125999968 230 DNVNAWIEAFKEHVSVMSPAYGPCVVPPRDWKTPFNGGFHTEAVASRVRFVKGRTDHVRKLTQ--------KQMPKVYKA 301
61806414  218 DKFHKNKEEIIRLAELFSPLAWPMLIEPRDWSPMHDGGYYLNDLTKCHEMVRRGKPLR-------------IQGETTYQF 284
148724458 215 REFLQHRDTILAAAEQLAFCQWPMLCPPIEWSNDHNGGYLSEQIRRVNPLIRKTGPLGTR-----------KQGDIPLAM 283
158345171 214 AEVREVLAFVPPEISGAAQM---MFAEPTPWDGAAGGGYYTERMKIDFPLRRVNRRTRKPLRRvir--dnvGKCTDVLAC 288
158345053 210 PEAKEFLQDPSAAMTWGGPGRSVMLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQiqlrhlgrDKMPRVYEA 289
167600472 210 PEAKEFLQDPSAAMTWGGPGRSVMLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQmqlrhlgrDKMPRVYEA 289
195546732 210 PEAKEFLQDPSAAMTWGGPGRSVMLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQmqlrhlgrDKMPRVYEA 289
225626353 210 PEAKEFLQDPSAAMTWGGPGRSVMLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQmqlrhlgrDKMPRVYEA 289
229604949 217 EELQGVFSDVLEHADTMV-HYPPMIVPPVRHEDIYNGGYLTDLSRRHTYSNRHIKRSRLREVNea-----fKQANGIRQA 290
281306683 214 APIRDFLLDEKASEWLAQPISLSMISPPLRWDRIVGGGFHTEKRQLKFPLIRVGGRIRHKHIReyrkamsaETMPNFFEP 293
125999968 302 INFLQSVKWSINTDTLETAQEILAKNlglgmpsfaPIITRDNKPACPLPLEFQH-LRGEElrqsltptqwDSFLAWKGDC 380
61806414  285 LNEIQKVKYRLNPFIVMVAEELEEREi--------EVGKFRPVINHPDPPKPPNmEDE------------ESRKQWRKDK 344
148724458 284 LNNLQGQAYKVNPEVLDIANHCYESN----------VTVGKFIRHAPLPVPPSPgEDCTE----------DQLTAYKRAR 343
158345171 289 ANYLQAQAFSIHTPTLELIKQVWNSG-----------GGALGIPKREAPPEPAFpFPETWdkdsateaelERFASWKRRM 357
158345053 290 VNTLQSVAYEINHDVYEIIDRVFTSG-----------GGVLGIPKRTYPDKPEFpLGDEWskenaseqelESFNRWKRSV 358
167600472 290 VNALQSVAYEINHDVYEIIERVFTSG-----------GGVLGIPQRTYPDKPEFpLGDEWakenaseqelEAFNRWKRSV 358
195546732 290 VNALQSVAYEINHDVYEIIERVFTSG-----------GGVLGIPQRTYPDKPEFpLGDEWakenaseqelEAFNRWKRSV 358
225626353 290 VNVLQSVAYEINHDVYEIIERVFTSG-----------GGVLGIPQRTYPDKPEFpLGDEWakenaseqelEAFNRWKRSV 358
229604949 291 LNKAQEVPYVVNQSIYDLVLQAKATG------------FDVGIPSHHQKPQPKFhLHGTDkadws-eddqEAFEVWKTQM 357
281306683 294 INYLQSIPYSMSEDMYDTVKNIWQEG-----------GGVLKVPKKAPPVKPVFpHAEGWnkegaseadmEVFNRWKRQT 362
125999968 381 SKLYTMETKRTSKASAVARMLNQASDLAKFESIYFVYAMDSRGRVYVqSSGVSPQSDDLGKSLLRSTKGKTLdSSEALHW 460
61806414  345 AIARNKNANEWRISCRTRMTMNCVREFKD-KEYYIPWSFDYRGRAYPiPSFLTPQDTDFGKSLIRFAEEAPI-TEDGMKW 422
148724458 344 REAEDFNAQISQKNWRTTEVMYVARKYADEASFWMPASFDYRGRVYFlNTALNPQGTDFDKALLYFAEEGPV----NEWW 419
158345171 358 HAWHMGKKELRKAQQGIGQALRVSAGAAA--RVWFPTFIDSRGRYYY-RGVLNPQGDEMCKALLHFADKRPL-GERGLYW 433
158345053 359 HRWYTGEREHTAKLREFAALYRVVREHHG-KAVYFPMHVDSRGRMYY-WGTPNPQGSDIAKACLRFHEKRVL-GKRGLYW 435
167600472 359 HRWYTGEREHTAKLREFAALYRVVREHHG-KAVYFPMHVDSRGRMYY-WGTPNPQGSDIAKACLRFHEKRAL-GKRGLYW 435
195546732 359 HRWYTGEREHTAKLREFAALYRVVREHHG-KAVYFPMHVDSRGRMYY-WGTPNPQGSDIAKACLRFHEKRAL-GKRGLYW 435
225626353 359 HRWYTGEREHTAKLREFAALYRVVREHHG-KAVYFPMHVDSRGRMYY-WGTPNPQGSDIAKACLRFHEKRVL-GKRGLYW 435
229604949 358 RQWYTKERKRVSQIRQLAITLDLCRRFMDEDALYFPTCVDWRYRLYF-KSHLNPQGSDIQKALLLLGRKKPL-GKRGLFW 435
281306683 363 FNWHNDLREHKSMAWEMHSFNKVVGMARG-KPVWNAMFADTRGRLYY-RGACSPQGSDATKAVVHFARKKPL-GHRGVYW 439
125999968 461 FLVLGGNLWGWDKKPFDVRVSHVldEDFADMVRDVATD-PLTFR-NWLSADEPWQFLAWAKEYArylDAVDDGTsaEFVT 538
61806414  423 LAFQVATTYGLDKATMEERLDWVnePENIKLIKRVATD-PINNIgDWEAADEPFEFLAGCEEYY---SVVLIKT--RTTT 496
148724458 420 LSFHVATTYGLDKETMVNRVQWA--RDNHELIDRIASD-PVRHT-EWHDADEPWCFLAACLEYK---ACVIDGT--KQTS 490
158345171 434 IQVHVANCFGEDKARFDARAAWA--VERKAELFAALEA-PADSC--FAEADTPLGAFAAVWEWR---EAERSGNpaAYCT 505
158345053 436 LKVHVANSLGCDKVYFDDRAAWV--DERWDDFQRALEEgPENYPnLFPEDESPLCAIAGLLELR---AAYASGNpeGYAS 510
167600472 436 LKVHVANSLGCDKVYFDDRAAWV--DERWDDFQRALDEgPENYPgLFPEDESPLCAIAGLLELR---AAYASGQpeRYQS 510
195546732 436 LKVHVANSLGCDKVYFDDRAAWV--DERWDDFQRALDEgPENYPgLFPEDESPLCAIAGLLELR---AAYASGQpeRYQS 510
225626353 436 LKVHVANSLGCDKVYFDDRAAWV--DERWDDFQRALDEgPENYPsLFPEAESPLCAIAGLLELR---AAYASGNpeGYAS 510
229604949 436 LKSHVATCFGFDKPLFEERAKWT--EERIDAIREWVKD-PLNNE-DFKDADEFWCMLAASIQLI---EALDSPDpeKYES 508
281306683 440 LKVHIANCFGFDKKKFKERAAWT--DQHWEHLLHGVTD-PSNSDvYRANNDAPLMAVAAVRELA---AAYASGNpeTFES 513
125999968 539 YLPVHQDGSCSGIQHYSAMLRDKTGAKAVNLMPSDT--PQDIYGEVAKVVIRKNKAIADMADSEqegysigkmklsvavS 616
61806414  497 GLPVATDATCSGLQILAGLARDKSTASLVNVIPSDK--PQDAYKVIAEKSLEHI-------------------------P 549
148724458 491 GLPIGIDATCSGLQHLAAMTRCGRTAALVNVTPTDK--PADAYKTVAQASLKHLPKEQHE-------------------- 548
158345171 506 GLPIHMDATCSGLQHFSAMLRDPVGGQYVNLYDSGGdsKADIYRKVAEVAQTRINRDAANPASK---------------D 570
158345053 511 GFIVHMDATCSGLQHYSAILRDEIGGAYVNLLPPGLa-KADIYSRVLGLVSESLERDRAEGTDGe--------------A 575
167600472 511 GFIVHMDATCSGLQHYSAILRDEVGGAYVNLLPPGLa-KADIYSRVLALVAESLARDREGAEGE---------------A 574
195546732 511 GFIVHMDATCSGLQHYSAILRDEVGGAYVNLLPPGLt-KADIYSRVLALVAGSLARDREGAEGE---------------A 574
225626353 511 GFIVHMDATCSGLQHYSAILRDEIGGAYVNLLPPGLa-KADIYSRVLGLVNEALERDRAEGADGe--------------A 575
229604949 509 NIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNltKADLYMDVKQRTDSKIKVALRDPE-----------------T 571
281306683 514 GIIVHMDATCSGLQHLSAMLRDPVGGRYVNLVPGGDe-KADIYARVAHLAMMQIERDAEG-------------------G 573
125999968 617 KAMAESWDAIGITRSLTKKPVMTLPYGSTRITCRESIDdylvsleEDELRKAKAEGRERNAVhpfeseeleglsyKNALN 696
61806414  550 ERLRPYW-----DRKKTKRCVMTIPYNAKPFSNRQYIR-------DAFEDIDIEVE-------------------NDELT 598
148724458 549 ------W----ITRKVTKRPVMCTPYGVTMSSARGYIR-------DQLVKDGHKEDLRSP---------------GVLNG 596
158345171 571 WHLAKLWTQWEIPRTLAKGPVMTYVYGATLRGVAEGIA-------DWLEEQQAIVPDGVRI--------------FDLAY 629
158345053 576 RGYALLWDKAGLTRSLTKKPCMTLVYGTTFKGVVDHCL-------DYLDESGVEIPEGVPS--------------YLLGS 634
167600472 575 RGYAVLWDKAGLSRSLTKKPCMTLVYGTTFKGVVDHCL-------DYLDEAGLEIPEGIPS--------------YRLGS 633
195546732 575 RGYAVLWDKAGLSRSLTKKPCMTLVYGTTFKGVVDHCL-------DYLDEAGLEIPEGIPS--------------YRLGS 633
225626353 576 RGYALLWDKAGLTRNLTKKPCMTLVYGTTFKGVVDHCL-------DYLDESGVEIPEGVPS--------------YRLGS 634
229604949 572 IVQAHYWTLNPITRSMTKRPTMTYFYSATLRSCTDYIF-------LGAADEGYEGTDEYTL--------------FKLCS 630
281306683 574 HACGMLWQALGVSRKLAKGPVMTYVYGATLRSVADGIG-------DFLDEQGYSAKDTGVPF-------------MKMCM 633
125999968 697 YMTSLVWPSISEVVRAPVVAMKAIRQLARAVT-KLNEGLYWTTPTGFIVEQRIYATDNLRVSSYLMGRVRMSLTV-ETET 774
61806414  599 QIVKAVRDAMEAVVPGPMKVMRWIEQEVSNAIkEGATEITWVTPSGFRVNQRLMKYDHKNVELHLMGRCRIK----VIDG 674
148724458 597 IVKAIFNEAIPEVIPGPVQVMAWLKRSAGQIIdRGDSTITWTTPSGFEVVQDLKKSKTYEVKTRIMGGARIKLQV-GDGF 675
158345171 630 YLGRVLFSAIEDVVPAAAAAMRWLRERARSAA--GDTPMLWFSPTGLLVEHDYRDFVEHRVKIRSCGITDIVVRE-DLDQ 706
158345053 635 YMATLILDAIRETVPSAVFAMEWLQRLAKALP-DASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTLYE-AKDE 712
167600472 634 YMATLILDAIRETVPSAVFAMEWLQRLARALP-DASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTLYE-AKDE 711
195546732 634 YMATLILDAIRETVPSAVFAMEWLQRLAKALP-DASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTLYE-AKDE 711
225626353 635 YMATLILDAIRETVPSAVFAMEWLQRLAKALP-DASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVTLYE-AKDE 712
229604949 631 FVSPLMRDSINEAMPAAARGMDYLKAVCQRVP--MEHHLQWKTVLGGLVINRYCNRHETRVKVRSMGINQVVLYNfDYER 708
281306683 634 YLAKLLFKAIEDTVPAAAALMRWLKDVVRHH--DRTQPVVFTTPHGLRVHHDYPDEEQTRVRVRSCGVEYVVMYQ-QLET 710
125999968 775 ---IDEAAMMGAAAPNFVHSLDAAHLISAVCAMADAGLEFVAVIHDSFGTLACDTQVLRDSLRSEMVAQYADVNRLEMLV 851
61806414  675 ekgVDLRHHKNATAPNLIHSLDASLLHLSATKFNAP----IALIHDSVLCRATDMTNLSTLVRDTYMHLFAEHDFLKDFA 750
148724458 676 tdePDRDHHKSALAPNVVHSNDASLLHLTFAFWDKP----FTVIHDCVLGRSCDMDQMGSDIRLHFAEMYKA-DVMQDWA 750
158345171 707 ---TRGNRMQNAVAPNFVHALDAAHLTFTARLLED-GGHAMVAIHDSFGTHPSSVDEMHTAIREAFVRLYSEFDPITLFL 782
158345053 713 ---LDPLRNANGIAPNFVHGLDSSHLGLVALACAAE-GIHIQAIHDSMGTYASDVDRMHVHIREQFITMYSGPCVLVELA 788
167600472 712 ---LDPVRNANGIAPNFVHGLDSSHLGLTALACAAE-GIPIQAIHDSMGTYAADVDRMHVHIREQFIAMYSGPCVLVELA 787
195546732 712 ---LDPVRNANGIAPNFVHGLDSSHLGLTALACAAE-GIPIQAIHDSMGTYAADVDRMHVHIREQFIAMYSGPCVLVELA 787
225626353 713 ---LDPLRNANGIAPNFVHGLDSSHLGLTALACAAE-GIPIQAIHDSMGTYAGDVDRMHVHIREQFVTMYSGPCVLVELA 788
229604949 709 ---NHRQKAVSGISPNFIHQGDSSHLMMTILNFDGD----IIPIHDSVATHACDVDDLHRVLREQFVILYTEHQNPLEVI 781
281306683 711 ---SKTTRMQNAIAPNFVHAMDACHLSMTTQRMAEL-DLDMAVIHDSFGTHPCDVDAMHECIRAAFIELYSDNDVLLNFA 786
125999968 852 QENEGRL---LQdFGISLPEMGDFDLTEILKSDYCFA 885
61806414  751 KAIN---------AKTEPPIIGDLEPESVIESTYFFC 778
148724458 751 DQVGVELpvdLI--------KNTLDIDSVNQSLYFFS 779
158345171 783 RGIGQ--------EEVAPPPKGNLDLTLFRSSEFGFC 811
158345053 789 RQLG---------VEATPPRRGSLNLEAVRDSWAFFC 816
167600472 788 KQLG---------IEATPPRRGSLNLEAVRDSWAFFC 815
195546732 788 KQLG---------IEATPPRRGSLNLEAVRDSWAFFC 815
225626353 789 RQLG---------VEATPPRRGSLNLEAVRDSWAFFC 816
229604949 782 RDAALEAgadL--EGIEMPPMGTLNLELVKDSPFFFC 816
281306683 787 IDTG---------TSILAPAKGDLDLSTLMDSEFFFC 814
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap