3JTZ


Conserved Protein Domain Family
Arm-DNA-bind_3

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pfam13356: Arm-DNA-bind_3 
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Arm DNA-binding domain
This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.
Statistics
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PSSM-Id: 433141
Aligned: 452 rows
Threshold Bit Score: 39.9354
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3JTZ_A         3 LTDAKIRT-L--------------KpsDK-P--F--KVSDS--HGLYLLV------K--PG-GSR---HW-Y-------- 39 
CDM26090       6 LSDTLVATlAcp----------pgRahLEyCdtLm--------rGLYVDVla---------nGRM---AF-R-------- 46 
WP_013331420   8 LTTRVLERlAre----------lpEgdEVwDsdQagyhvragkrGLSLRV------------------SY---------- 49  Halomonas elongata
CCB67440       6 LTARFVET-A--------------VasAGrLe-----vRDTkaRGLELRV---------SKaGSK---IW-A-------- 44 
WP_013925780   9 naDEYCRKfEpk----------dkPiyIHdSqvK----------GLVFRImp---------tGSK---SW-I-------- 47  Parachlamydia a...
WP_012093061   6 LTDKTIKA-A--------------K--VS-EgtRklDLFDTlaRGLCIRV---------GAgGVK---TF-Y-------- 46  Brucella anthropi
WP_013040219   8 LTKLSLDNlPpa----------dpGrlYEiAdaLv--------pGLRVRVadsevaAgrFk-GKAsiiTFvLv------- 61  Sphingobium ind...
WP_012971593   5 LTDRFIKSvEppekgkriywddhrDspK----------------GFGLRVla---------sGTK---SF-Vlryraktg 55  Allochromatium ...
WP_013066694   5 LSERVVKA-A--------------EvgSRkYv-----lFDEdtPGFGLCV---------YTtGRK---GF-V-------- 43  Rhodobacter cap...
CCA91120      21 LSDQLVRD-A--------------E--PPaSgnR--IIYDAklPGFGLRV------Ta---kGVR---SF-V-------- 60 
3JTZ_A        40 --LKYR-IS-G--KEs-RIAL--GA-Y----PA-----------------I--SLSDARQQREGIRKMLAL-NIN 80 
CDM26090      47 --IRYRqggrk-----rvhtL--GDaR-----L-----------------L--TVAEARDRARTALRKVIAgG-D 87 
WP_013331420  50 ----YNlagk-------rrvLtlGR-YgvgnM---------------------TAAKARKDAGEVLGIVAQgG-D 90  Halomonas elongata
CCB67440      45 --LRYR--RqSdrAKr-TVTL--GA-F----PD-----------------F--TLEQARDWAEDLKREIAR-GED 87 
WP_013925780  48 --LRYH--------------FkeGDeW----KqrktglgpfrqdrndvtgL--TASAARIEAERLKKEVKYeGAD 100 Parachlamydia acanth...
WP_012093061  47 --FVYSdA--S--GKrvWNKL--GE-YgehtGQ-----------------F--TLAAARKQAKELRGYVAG-GND 92  Brucella anthropi
WP_013040219  62 --ARFPpslnp-----trraL--GRySrdggP------------------L--TLQAARDKAREWKGKIAE-GID 106 Sphingobium indicum
WP_012971593  56 teRI----------------QtiGE-Y----P------------------TpwSLTAARLEAAKIRANVDA-GTD 90  Allochromatium vinosum
WP_013066694  44 --LIYri----agQQk-RFTI--GV-W----PT-----------------W--SVTAARDEAKRLIREIDR-GED 84  Rhodobacter capsulatus
CCA91120      61 --LNYR-VK-G---RerRITI--GQ-Y----PT-----------------W--KLLAARKQAEHLKRQIDL-GID 101
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