Conserved Protein Domain Family
Arabinose_bd

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pfam12625: Arabinose_bd 
Arabinose-binding domain of AraC transcription regulator, N-term
AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].
Statistics
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PSSM-Id: 432679
Aligned: 85 rows
Threshold Bit Score: 102.721
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Bphy_5805  47 GLDANAVLAGTELGADAVANpfTLTSSLQFLTAARNAVRMYGKPDLGVRVGRSLHASSYGMYGYALLCSETMTQTFDTAV 126
WP_012396784   20 GGDPAALLRAAGVREQDVGNydAFIPVRAVIRAIETAAAATGTHDFGRQLAQRQGIEILGPVGVAARTAATVADALMIFH 99  Mycobacterium ...
P9WMJ3         23 GADPLPFLRRFDIPPGIEHQedAFMSLAGFVRMLEASAAELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIG 102 Mycobacterium ...
Q5Z0R8         20 GGDAEEFAAAVGLPVAALDAddLLVPDQAVAAVLELAAHRLDRPDLGLRIARRQDLDMLGPLALAIRNSPTLAHVLECTS 99  Nocardia farci...
CAM03564       20 GGRAEDHARAAGLPVAALDVddLLVPDHVLAEVLEIAAAELGCPDLGLRVAARQDLGMLGPLALAIQNSPSVGDALECTS 99 
jgi:Acry_2392  51 GADPDLVLGEAGFDPRDLEDprATVPLARYVAMMERAAARSGDSHFGLRFGQQFQPEALGLIGELALAAPDVGTGLAAFA 130
Q2RVL5         38 GADADAVFIKAGVRESDLGDprLSLDLGSYVAMFELAAVATGNDNFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLA 117 Rhodospirillum...
Q5NMQ6         39 GGDADRVFGSCGVDPAIMERptHSLSLTNYCRLMEEAAIDSQNGNFGLHYGKQFQPQNLGLIGYIGLSSPTLGDALSNVA 118 Zymomonas mobilis
Q6FC93         35 GADVDRVFGISGINPELLASptLSLQLPNYCHVLEQAAELSGCDNFGLHYGQQFQPKSLGLIGYIGLCSATLESALVNMT 114 Acinetobacter ...
ACR30599       37 GAPCDALLAEFGLSRRQLSDpyEILPLGRYIGAFERAAQVLGESFLGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFS 116
jgi:Bphy_5805 127 KYHQLANGmlDIRWa---EHDDA-ATWIFp-kRnevrvpdVdeplYDflIdlQfAVHVTVIKDVMGAWCVpARAMFTRAQ 201
WP_012396784  100 TFMAAYSPaiHIEItplaHTQRSfVAIEIvpdDpi---pcP----HT--LelAlGVSLGVFRLLMGADYTpLAVHLPHDP 170 Mycobacterium ...
P9WMJ3        103 RYLYVHSPalTLTVs--sTTARSnVRFGYevtEpgi-pypL----QG--YelSmANAARMIRLLGGPQARaRVFSFRHAQ 173 Mycobacterium ...
Q5Z0R8        100 RYLFVHARslSLEIepdpHGERGvLALRYgvrPglp--tpV----QG--TdlGlGFVHRAIQRLVAPRYGlRSVELPYRP 171 Nocardia farci...
CAM03564      100 RYLFVHARslSLVLeddpHGARGvAALRYglpPgap--iaV----QA--TdlAlGFLHRAIEFLVSGPYGlRTVELPHTP 171
jgi:Acry_2392 131 RHFIQHQQntETRLa----rEGRsLRLEYrivDpri-wsrR----QD--AelTmGMFANLLRRALGGALEiEEVWFEHPA 199
Q2RVL5        118 TLFPFHQQatQTRLr----rDGTlLRLEYrilDgri-idrR----QD--AelTmGMFANVLRAALGPGWRpEEVHFEHPR 186 Rhodospirillum...
Q5NMQ6        119 KDFHWHQHdtLTRFv----kRENqWHFEYqvrHgai-trrR----QD--AelSmGMILNIIRSALGSKWTpQEVNFEHYR 187 Zymomonas mobilis
Q6FC93        115 NHFYLHQKdtLNRMv----dLGDcWRLDYqvhHgai-ltrR----QD--AelTlGMFMNVIRGVLGGHYSpREIHFEHTR 183 Acinetobacter ...
ACR30599      117 EALASWQSaaIVDLa----gNHGwPMWRYriaHpgi-wprR----QD--AeySvSSMCHMIRLVRGAQWKpVEVHFEHAA 185
jgi:Bphy_5805 202 Pp-HAAlLADVLECPlVFEQPQNLLSYPAAWLSRTP 236
WP_012396784  171 Lt-PPTtYVRYFECTpHFAERRSGFTVRSTDLVRPL 205 Mycobacterium marinum
P9WMJ3        174 LgtD-AaYREALGCTvRFGRTWCGFEVDHRLAGRPI 208 Mycobacterium tuberculosis H37Rv
Q5Z0R8        172 Sa-PAAaYEEFFGAPvRTGRPAALLRVPAELADRPL 206 Nocardia farcinica
CAM03564      172 Rs--LRaHEEFFGVPvRTGSSAPMLRLPRSLAARPL 205
jgi:Acry_2392 200 Pe-QAQaHAAAFGAPvFFAAPANAISFRAAGLERPM 234
Q2RVL5        187 Pe-GWAaHGRAFDADiHFGQPTNALVFRDRDRERPM 221 Rhodospirillum rubrum ATCC 11170
Q5NMQ6        188 Pe-QAHeHEKVFGAAvWFEQPCNSIVLSEKDLMRPM 222 Zymomonas mobilis
Q6FC93        184 Pe-FWQeHSKLFNAPvYFDQPFNSILLSKKDLQHPM 218 Acinetobacter baylyi
ACR30599      186 Pd-EIKpLMRVFQAPvRFQQPVSGVVMCAQDLDAPL 220
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