Conserved Protein Domain Family
TMF_DNA_bd

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pfam12329: TMF_DNA_bd 
TATA element modulatory factor 1 DNA binding
This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Statistics
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PSSM-Id: 372049
Aligned: 47 rows
Threshold Bit Score: 29.9671
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002491609  271 NNLQKKLEAKELQVKELLEEGMKLSSNEVSLLQTVKRLKQENNSLA--NELNNASeinRKLESRSQKLDALEKEFIKEE 347 
Q75DU4        129 SSLLLLVKEKDARIEELLEEQQETSAKERRATQALSKMEKKYNKQV--AESAALE---QKLRKQASENVLLKEEKDKAK 202  Eremothecium g...
EEE61640       71 LQLENVVREKSAQIAALVSELEVLQVPNVADDESVLKANAHNEMLE--KQVLRLG---SDLEDQVKKGESLEARASEAE 144 
Q6FK79         97 SSVFKLIKGKDEEIAQLTKKLEDRRKQDTANEKLLSKLTADNEKLN--KNNDNLS---KKLNESNQEISNLQQKYSLSE 170  [Candida] glab...
CAO98778       95 VSVLKLVKGKDEEIDQLKKNVEKYERQENLGKLKIGKLKEAMEIAT--SSRDQLT---KELNLVVMEKDSLVSKLKEAE 168 
XP_002847892  282 KWMREDMESKEADIAELQ---EQLKSAESKQAEEVANLREEINELE--YTIREKD---RRIEEKEEEIENLQSKHADEN 352 
ACR50691        9 KGEAE-LNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAElnKKVESLQ---NKVADLEKEISNLEILLGGAD 83  
XP_001270700  540 LDLLATITEKDDQIEELQEESQDLRDDNDKLRQTLDMLSKENGATL--EQTAVLK---QEASRLQESVEQGRLLLGQKD 613 
EEE64668      510 SDAAALLKEKDEIISQVMAEGEELSKKQAAQEATMRKLRAQVRELE--EEKQRLN---SKIQVEETKVESIKRDKAATE 583 
XP_001778871  300 SDSSMLLKEKDEIIKAVMAEGEELSKKQAAIEGTVKKLRAQVRELE--EEKNRLS---SKLQVEEAKVESMRKDKAATE 373 
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