- dbSNP Submission Quick Start
- Searching dbSNP for Variations and Variation Data
- General dbSNP Search Options
- Locating and Analyzing SNPs Associated with Disease Causing Mutations
- Locating SNPs in a Gene or in Genes
- Locating SNPs in (a) Chromosome(s)
- Locating ENCODE (Encyclopedia Of DNA Elements) Project SNPs
- Locating SNPs in a Protein Family
- Searching for SNP Primer Sequences
- Searching for SNPs in a NCBI Genome Build and in BAC Clones
- Searching for a Class of Variations in dbSNP
- Searching for SNPs or Specific SNP Data Using a Specific ID
- Using SNP IDs to Find Genbank Accessions, and Vice Versa
- Searching for SNPs Using Key Words, Names (Gene, Author, etc.), or Citations
- Searching for SNPs Using Positional Data or EST Alignments
- Retrieving Specific Data for a SNP
- Searching for SNP Genotype, Allele and Frequency Data
- Batch Query: Retrieving information for a large numbers of SNPs
- Searching dbSNP using Sequence Data Homology (Search using BLAST)
- Searching for SNPs in Raw Sequence Data
- Searching for SNPs between Mouse Strains
- Searching for Statistics, Data Histories and Historical Data in dbSNP
- Searching for Structural (Copy Number) Variations
- eSearch (Programmatic Searches)
- Search Result Discrepancies
- Errors that Occur While Searching
- Unable to Find Published SNP in dbSNP
- Submitting Variations and Variation Data to dbSNP
- Submission Handles
- Requirements for dbSNP Submissions
- Organism Data Accepted by dbSNP
- Submitting Various Data Types to dbSNP
- The dbSNP Excel Submission Template
- Filling out the Submission Worksheets
- Filling out Specific Sections/Fields within a Submission Worksheet
- Submission Formatting
- Automating the Submission Process
- Submitting Information for Existing SNPs
- Batch Submissions and Large Submissions to dbSNP
- Submitting SNPs using a Reference Sequence Position
- Submission and Assignment of Submitted SNP(ss)/RefSNP(rs) Numbers
- dbSNP Submission Processing and the “Hold Until Published” (HUP) Policy
- Submission Errors and Submission Withdrawal
- Submission Using dbSNP’s online Clinical/LSDB Submission Resources
- External Submission Tools
- Using dbSNP Data Reports
- Entrez SNP and Entrez Gene Response Pages
- Choosing the Data Report that Contains the Data You Need
- Finding Information in a dbSNP Data Report
- Compact SNP data: The Bitfield
- Custom Report Formats
- Interpreting Discrepancies in refSNP Reports
- Interpreting Discrepancies in Submitted SNP (ss) Detail Reports
- Discrepancies between Cluster Report Data and FTP Content
- Discrepancies between Cluster Report data and Other Genome Resources
- Field Definitions
- SNP Class Definitions
- Sequence Formatting in dbSNP Reports
- Batch Reports
- Displaying Reports
- Links from dbSNP Reports to Other Online Data Resources
- Links from Other Online Data Resources to dbSNP Reports
- Creating Your Own Link to a dbSNP Record
- Error Messages in refSNP Cluster Reports
- The dbSNP Build Process
- What Triggers a New Build?
- The SNP Build Schedule/Notification of Build Release
- Data Changes that Occur Between Builds
- Lag Time between dbSNP Website and FTP Site Following Build
- The Difference Between the SNP Build and the Genome Build
- Using Old vs. New Build Data
- Finding Old Build Data
- Finding a Build Number Based on a Date and Vice Versa
- The dbSNP Mapping Process
- Merging RefSNP Numbers and RefSNP Clusters
- Ancestral Allele Data
- Average Allele Frequency Calculation
- Double Hit SNP Computation
- Hardy Weinberg Equilibrium Data
- Heterozygosity Data
- Linkage Disequilibrium Data
- dbSNP Haplotype Data
- dbSNP and Haplogroup Data
- dbSNP and Haplotype Tagged SNPs
- dbSNP and HapMap Data
- Locating and Using Data from dbSNP’s FTP Site
- Finding Specific Data in dbSNP’s FTP Files
- SNP Report Files
- dbSNP Data Dictionary
- Missing FTP Files
- Downloading From dbSNP’s FTP Site
- Decompressing Data Obtained from dbSNP’s FTP Site
- Parsing Data Obtained from dbSNP’s FTP Site
- Discrepancies between dbSNP Summary Data and FTP Data
- Discrepancies between Cluster Report Data and FTP Data Contents
- Discrepancies between FTP Documentation and Data Dictionary
- Direct Queries of dbSNP’s Database Server
- Updating dbSNP’s FTP data
- Eutils (E-utilities)
- dbSNP Organization and Structure (Schema)
- dbSNP Data Content Information
- dbSNP Data Origins
- dbSNP Data Quality Control
- dbSNP Data Statistics
- dbSNP Data Storage Information
- Classes of Genetic Variation Included in dbSNP
- Size of Genetic Variations Included in dbSNP
- Sequence Notation for SNPs Housed in dbSNP
- Submitted SNPs (ss) and Other Data Submitted to dbSNP
- Clustered RefSNPs (rs) and Other Data Computed in House
- Ancestral Allele Data
- Association Studies
- Ascertainment Bias
- Automated SNP Collection (Data Mining)
- Average Allele Frequency Calculation
- Double Hit SNP Computation
- Hardy Weinberg Equilibrium Data
- Heterozygosity Data
- Linkage Disequilibrium Data
- References
- Citing dbSNP
- General Information about dbSNP, Single Nucleotide Polymorphisims, and Genetics
- Human Variation Batch Submission Quick Start
- Data Types Accepted in a Variation Batch Submission
- Beginning the Submission Process
- Using the Excel Submission Template to create your Batch Submission
- Submitting Data
- Submission Processing
- Variation ID Assignment
- Hold Until Published (HUP) Policy
- How do I Update Data I’ve already Submitted?
- How do I find my variations after submission, but before rs number assignment?
- Genome Workbench SNP Tools (GST) Quick Start