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Uncultivated Pseudomonas sp. UBA6315 genome recovered from SRX823423

Identifiers
BioSample: SAMN06453133; Sample name: Pseudomonas sp. UBA6315; SRA: SRS2034911
Organism
Pseudomonas sp. UBA6315
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA6315
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX823423 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated71.05%
contamination_estimated1.75%
environmental_sampletrue
genome_coverage42.2
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1750040.
Description

Uncultivated genome recovered from an assembly of the SRX823423 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453133
ID:
6453133

BioProject SRA Nucleotide

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