U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Oblitimonas sp. UBA1679 genome recovered from SRX498680

Identifiers
BioSample: SAMN06454211; Sample name: Oblitimonas sp. UBA1679; SRA: SRS2033978
Organism
Oblitimonas sp. UBA1679
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Thiopseudomonas; unclassified Thiopseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationGermany: Zoo of Hamburg
isolateUBA1679
isolation sourceFeces of three-weeks old elephant
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX498680 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.84%
contamination_estimated0.86%
environmental_sampletrue
genome_coverage1896.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1201870.
Description

Uncultivated genome recovered from an assembly of the SRX498680 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454211
ID:
6454211

BioProject SRA Nucleotide

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center