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Uncultivated Collinsella sp. UBA4258 genome recovered from SRX290706

Identifiers
BioSample: SAMN06451177; Sample name: Collinsella sp. UBA4258; SRA: SRS2032821
Organism
Collinsella sp. UBA4258
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; unclassified Collinsella
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA4258
isolation sourcelow methane producing sheep
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX290706 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated92.90%
contamination_estimated0.81%
environmental_sampletrue
genome_coverage97.83
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR873596.
Description

Uncultivated genome recovered from an assembly of the SRX290706 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451177
ID:
6451177

BioProject SRA Nucleotide

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