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Uncultivated Treponema sp. UBA1240 genome recovered from SRX035182

Identifiers
BioSample: SAMN06455236; Sample name: Treponema sp. UBA1240; SRA: SRS2031927
Organism
Treponema sp. UBA1240
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA1240
isolation sourceSwitch grass fiber attached community in cow rumen, 72 hour post incubation
metagenome sourcebovine gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX035182 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated78.26%
contamination_estimated1.40%
environmental_sampletrue
genome_coverage20.78
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the bovine gut metagenome reads: SRR094926,SRR094429,SRR094437.
Description

Uncultivated genome recovered from an assembly of the SRX035182 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455236
ID:
6455236

BioProject SRA Nucleotide

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