U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from SRA

Animal sample from Trichomycterus rosablanca (Rosablanca cavefish) for VGP genome, fTriRos1

Identifiers
BioSample: SAMN32755940; Sample name: Animal sample from Trichomycterus rosablanca (Rosablanca cavefish) for VGP genome, fTriRos1; SRA: SRS19335847
Organism
Trichomycterus rosablanca
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Otomorpha; Ostariophysi; Otophysi; Characiphysae; Siluriformes; Loricarioidei; Trichomycteridae; Trichomycterus
Package
Model organism or animal; version 1.0
Attributes
isolatefTriRos1
development stageadult
sexmale
tissueheart, liver, muscle
biomaterial providerUniversidad de los Andes
collected byMauricio Torres
collection date2021-06-26
geographic locationColombia: Andes Mountains, Santander
latitude and longitude6 N 73 W
treatmentflash frozen in liquid nitrogen
Tube IDsMT 002-2, MT 002-3, MT 002-6
Description

Trichomycterus rosablanca is a new troglobitic catfish species from caves in southeastern Santander, Colombia. These caves are drained by the Carare River of the Magdalena River basin. The new species is characterized by the advanced condition in the typical troglomorphisms found in other congeneric cave-dwelling species, such as absence of eyes and pigmentation (written by Carlos DoNascimiento 2018, Biota Colombiana). This sample is from a male found in Andes caves in Santander, Colombia, collected by Mauricio Torres and coordinated by Daniel Cadena to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP) and a Colombia Genomes Project. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.

BioProjects
PRJNA1147607
Retrieve all samples from this project

PRJNA1074370 Trichomycterus rosablanca isolate:fTriRos1
Retrieve all samples from this project

PRJNA924297 Trichomycterus rosablanca isolate:fTriRos1
Retrieve all samples from this project

PRJNA924296 Trichomycterus rosablanca isolate:fTriRos1
Retrieve all samples from this project

PRJNA516733 Various_Species
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2023-01-16
Accession:
SAMN32755940
ID:
32755940

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center