Metagenome-assembled genome: SRP308112_co1_106

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Myxococcales bacterium
cellular organisms; Bacteria; Pseudomonadati; Myxococcota; Myxococcia; Myxococcales; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2013-07-07
environmental medium	aquatic
geographic location	Pacific Ocean
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Oxygen Deficient Zones are areas of the ocean with <10 nM oxygen. Here we sequence a detailed depth profile of the microbial community across the Eastern Tropical South Pacific Oxygen Deficient Zone
sample name	SRP308112_co1_106
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP308112_co1_106
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	91.35
completeness software	CheckM2;1.0.2;default
contamination score	7.4
geographic location (latitude)	-13.0
geographic location (longitude)	-82.2
local environmental context	metagenome
metagenomic source	metagenome
sample derived from	SAMN18055980,SAMN18055987
scientific_name	uncultured Myxococcales bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13782123,SRR13782130 of study SRP308112.