Metagenome-assembled genome: SRP335695_co1_84

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Result Filters

Organism: uncultured Pseudoflavonifractor sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pseudoflavonifractor; environmental samples

Attributes

broad-scale environmental context	host
collection date	2019
environmental medium	host
geographic location	China
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Hawksbills and green turtles have been already vulnerable species, so it is imperative to explore these factors affecting health of sea turtles. The gut microbiota is closely linked to host nutrition, immunity and health. In the study metagenomic analysis was used to reveal taxonomic and functional diversity of gut communities from the hawksbills and green sea turtles.
sample name	SRP335695_co1_84
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP335695_co1_84
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT;2.15;default
completeness score	94.07
completeness software	CheckM2;1.0.2;default
contamination score	0.18
geographic location (latitude)	22.15
geographic location (longitude)	114.33
local environmental context	gut biome
metagenomic source	gut metagenome
sample derived from	SAMN21235232,SAMN21235230
scientific_name	uncultured Pseudoflavonifractor sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15721657,SRR15721659 of study SRP335695.