Metagenome-assembled genome: SRP162660_co3_99

Organism: uncultured Sphingomonadales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2016-09
environmental medium	aquatic
geographic location	Japan
investigation type	metagenome-assembled genome
isolation source	hot springs metagenome
project name	The goal of this project was to characterize the microbial community of Japanese hot springs as unique analogs of early Earth environments, including those in which geobiologically important rock types like stromatolites and banded iron formations were deposited. Understanding the diversity and metabolisms of microbes in these environments, and the geochemical cycling they support, will help us to understand how these rock types may have formed early in Earth history.
sample name	SRP162660_co3_99
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP162660_co3_99
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	SemiBin2;2.0.2;default
completeness score	99.36
completeness software	CheckM2;1.0.2;default
contamination score	0.31
geographic location (latitude)	34.31800000
geographic location (longitude)	139.21600000
local environmental context	hot springs biome
metagenomic source	hot springs metagenome
sample derived from	SAMN10130912
scientific_name	uncultured Sphingomonadales bacterium
sequencing method	Illumina HiSeq 3000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR7905024 of study SRP162660.

BioProject: PRJEB82487 Bin Chicken Rare Biosphere Genomes
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BioSample