Metagenome-assembled genome: binchicken_co323_71

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Result Filters

Organism: uncultured Atopobium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; environmental samples

Attributes

broad-scale environmental context	host
collection date	2011-07
environmental medium	host
geographic location	Central African Republic
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Traditional human communities have shown more microbiome similarities with nonhuman primates in comparison to industrialized populations. In this study, we have profiled the fecal metagenomes of BaAka hunter-gatherers and Bantu agriculturalists from Central Africa and compared with the sympatric gorillas across seasons of variable dietary intake to understand this functional convergence.
sample name	binchicken_co323_71
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	binchicken_co323_71
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	93.25
completeness software	CheckM2;1.0.2;default
contamination score	2.96
geographic location (latitude)	6.6111
geographic location (longitude)	20.9394
local environmental context	gut biome
metagenomic source	gut metagenome
sample derived from	SAMN15047039,SAMN15047021
scientific_name	uncultured Atopobium sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11880811,SRR11880843 of study SRP265342.