Metagenome-assembled genome: SRP344714_co2_279

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Result Filters

Organism: uncultured Sphingobacteriaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; environmental samples

Attributes

broad-scale environmental context	terrestrial
collection date	2016
environmental medium	terrestrial
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Study using metataxonomic approaches to characterize both bacterial and fungal diversity as well as shotgun metagenomic sequencing for broad characterization of the vermicomposting microbiome
sample name	SRP344714_co2_279
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP344714_co2_279
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT;2.15;default
completeness score	89.17
completeness software	CheckM2;1.0.2;default
contamination score	1.06
geographic location (latitude)	43.03
geographic location (longitude)	-8.08
local environmental context	metagenome
metagenomic source	metagenome
sample derived from	SAMN22876309,SAMN22876308
scientific_name	uncultured Sphingobacteriaceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16798008,SRR16798009 of study SRP344714.