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Metagenome-assembled genome: SRP219642_co1_128

Identifiers
BioSample: SAMEA117292642; SRA: ERS22360177
Organism
uncultured Sphingobacteriaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; environmental samples
Attributes
broad-scale environmental contextaquatic
collection date2017-08-18
environmental mediumaquatic
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcefreshwater metagenome
project nameShotgun Illumina HiSeq sequencing of environmental whole genomes (metagenomes) in water samples from an urban watershed
sample nameSRP219642_co1_128
ENA first public2024-12-11
ENA-CHECKLISTERC000047
INSDC center nameCMR
INSDC statuspublic
Submitter IdSRP219642_co1_128
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;3.15.4;default
binning parameterscoverage and kmer
binning softwareSemiBin2;2.0.2;default
completeness score84.2
completeness softwareCheckM2;1.0.2;default
contamination score1.09
geographic location (latitude)38.943062
geographic location (longitude)-94.593613
local environmental contextfreshwater biome
metagenomic sourcefreshwater metagenome
sample derived fromSAMN12647040,SAMN12647041
scientific_nameuncultured Sphingobacteriaceae bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10036018,SRR10036035 of study SRP219642.

BioProject
PRJEB82487 Bin Chicken Rare Biosphere Genomes
Retrieve all samples from this project

Submission
EBI; 2024-12-12
Accession:
SAMEA117292642
ID:
45803183

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