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1eb63393-43b3-4ba7-aba7-ea4ddc7e67a3-asg-MAGScoT_cleanbin_000037

Identifiers
BioSample: SAMEA114704053; SRA: ERS17120098
Organism
Candidatus Poribacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Poribacteria; unclassified Candidatus Poribacteria
Attributes
broad-scale environmental contextaquatic biome
collected byJASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
collection date2021-01-25
depth13.5
environmental mediumadult sponge tissue
geographic locationCuracao
host life stageadult
hostChondrilla caribensis
host taxonomy ID1336846 (1336846)
identified byJASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
investigation typemetagenome-assembled genome
isolation sourceSponge: Chondrilla caribensis
tissueWHOLE ORGANISM
project nameASG
family rolebenificial
sample name1eb63393-43b3-4ba7-aba7-ea4ddc7e67a3
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-11-23T09:20:14Z
ENA-LAST-UPDATE2023-11-23T09:20:14Z
External IdSAMEA114704053
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
INSDC first public2023-11-23T09:20:14Z
INSDC last update2023-11-23T09:20:14Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id1eb63393-43b3-4ba7-aba7-ea4ddc7e67a3
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
collecting institutionUniversity of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
completeness score96.44
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score2.2
geographic location (latitude)12.12
geographic location (longitude)-68.97
geographic location (region and locality)Piscadera Bay | Station Buoy #1
habitatcoral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)
identifier_affiliationUniversity of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
local environmental contextmarine coral reef biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted47
sample derived fromSAMEA114704014
scientific_nameCandidatus Poribacteria bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000074
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity markertaxonomic novelty determined using RED
tolidodChoCari5.Poribacteria_1
Submission
EBI; 2023-11-24
Accession:
SAMEA114704053
ID:
38401442

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