broad-scale environmental context | aquatic biome |
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collected by | JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER |
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collection date | 2021-01-25 |
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depth | 13.5 |
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environmental medium | adult sponge tissue |
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geographic location | Curacao |
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host life stage | adult |
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host | Chondrilla caribensis |
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host taxonomy ID | 1336846 (1336846) |
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identified by | JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER |
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investigation type | metagenome-assembled genome |
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isolation source | Sponge: Chondrilla caribensis |
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tissue | WHOLE ORGANISM |
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project name | ASG |
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family role | benificial |
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sample name | 1eb63393-43b3-4ba7-aba7-ea4ddc7e67a3 |
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specimen voucher | NOT PROVIDED |
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16S recovered | Yes |
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16S recovery software | PROKKA (version 1.14.5) |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2023-11-23T09:20:14Z |
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ENA-LAST-UPDATE | 2023-11-23T09:20:14Z |
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External Id | SAMEA114704053 |
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GAL | Geomar Helmholtz Centre |
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GAL_sample_id | NOT PROVIDED |
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INSDC center name | Tree of Life Programme |
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INSDC first public | 2023-11-23T09:20:14Z |
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INSDC last update | 2023-11-23T09:20:14Z |
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INSDC status | public |
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MAG coverage software | Minimap2 (version 2.24-r1122) |
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Submitter Id | 1eb63393-43b3-4ba7-aba7-ea4ddc7e67a3 |
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assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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assembly software | metaMDBG |
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binning parameters | coverage; graph |
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binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7) |
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collecting institution | University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology |
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completeness score | 96.44 |
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completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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contamination score | 2.2 |
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geographic location (latitude) | 12.12 |
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geographic location (longitude) | -68.97 |
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geographic location (region and locality) | Piscadera Bay | Station Buoy #1 |
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habitat | coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate) |
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identifier_affiliation | University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology |
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local environmental context | marine coral reef biome |
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metagenomic source | sponge metagenome |
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number of standard tRNAs extracted | 47 |
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sample derived from | SAMEA114704014 |
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scientific_name | Candidatus Poribacteria bacterium |
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sequencing method | Pacbio Sequel II |
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specimen id | GHC0000074 |
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tRNA extraction software | PROKKA (version 1.14.5) |
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taxonomic classification | GTDB-TK (version 2.3.2); GTDB (release 214) |
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taxonomic identity marker | taxonomic novelty determined using RED |
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tolid | odChoCari5.Poribacteria_1 |
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