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metabat2_pooled_hifiasm.89 MAG

Identifiers
BioSample: SAMEA115146383; SRA: ERS17877243
Organism
uncultured Bacilli bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; environmental samples
Attributes
broad-scale environmental contextGallus gallus
collection date2021-09-15
environmental mediumCaecal contents
geographic locationUnited Kingdom
isolation sourceCaecal contents from a chicken (Gallus gallus)
project nameMetagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample namemetabat2_pooled_hifiasm.89 MAG
ENA first public2024-05-09
ENA-CHECKLISTERC000011
External IdSAMEA115146383
INSDC center nameThe Roslin Institute (University of Edinburgh)
INSDC last update2024-01-26T11:57:50Z
INSDC statuspublic
Submitter Idmetabat2_pooled_hifiasm.89 MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareHifiasm-meta
binning parametersDefault MetaBAT 2 parameters
binning softwareMetaBAT 2
completeness score91.69
completeness softwareCheckM2
contamination score0.82
geographic location (latitude)55.86
geographic location (longitude)-3.2
local environmental contextGastrointestinal tract microbiota
metagenomic sourcechicken gut metagenome
sample derived fromERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944
scientific_nameuncultured Bacilli bacterium
taxonomic identity markerGTDB-Tk
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944

BioProject
PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

Submission
EBI; 2024-05-11
Accession:
SAMEA115146383
ID:
41371237

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