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ERS11624169

Identifiers
BioSample: SAMEA14447359; SRA: ERS12066185
Organism
Variovorax sp. YR752
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax; unclassified Variovorax
Attributes
collection date2019-04-16
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MIK16A5-260-8-m2-bin116
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447359
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:05Z
INSDC statuspublic
Submitter IdJJ-MIK16A5-260-8-m2-bin116
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score90.17
completeness softwarecheckm
contamination score4.83
geographic location (latitude)50.65531976
geographic location (longitude)13.95031488
metagenomic sourcefreshwater metagenome
sample derived fromERS11624169
scientific_nameVariovorax sp. YR752
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MIK16A5-260-8-m2-bin116 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447359
ID:
41025718

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