collection date | 2020-04-08 |
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broad-scale environmental context | marine biome [ENVO:00000447] |
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local-scale environmental context | microbial feature [ENVO:00002150] |
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environmental medium | coastal sea water [ENVO:00002150] |
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geographic location | North Sea |
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investigation type | metagenome-assembled genome |
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isolation source | marine water |
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project name | 2020 Helgoland Spring Bloom Metagenomes |
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sample name | AG_MB45 |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2022-09-23 |
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ENA-LAST-UPDATE | 2022-09-23 |
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External Id | SAMEA110055894 |
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INSDC center alias | Max Planck Institute for Marine Microbiology |
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INSDC center name | Max Planck Institute for Marine Microbiology |
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INSDC first public | 2022-09-23T08:24:24Z |
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INSDC last update | 2022-09-23T08:24:24Z |
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INSDC status | public |
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Submitter Id | AG_MB45 |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | Flye v2.8.3 |
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binning parameters | anvi'o 7, default parameters |
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binning software | Metabat2 and manual refinement with anvi’o v7 |
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completeness score | 86.27 |
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completeness software | CheckM v1.0.18 |
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contamination score | 0 |
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geographic location (latitude) | 54.19 |
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geographic location (longitude) | 7.9 |
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metagenomic source | marine metagenome |
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sample derived from | ERS12037245 |
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sequencing method | Pacific Biosciences Sequel II |
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taxonomic identity marker | multi-marker approach (GTDB-tk v1.3.0, GTDB v202) |
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