MGBC105131

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Helicobacter typhlonius
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC105131
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03
ENA-LAST-UPDATE	2023-02-03
External Id	SAMEA112379029
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:36:33Z
INSDC last update	2023-02-03T00:36:33Z
INSDC status	public
Submitter Id	MGBC105131
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	98.65
completeness software	CheckM
contamination score	0.71
geographic location (latitude)	52.21109
geographic location (longitude)	10.53246
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERR3357630
scientific_name	Helicobacter typhlonius
sequencing method	Illumina
taxonomic identity marker	multi-marker approach