MGBC134874

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Result Filters

Organism: Helicobacter typhlonius
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC134874
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03
ENA-LAST-UPDATE	2023-02-03
External Id	SAMEA112407788
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:42:12Z
INSDC last update	2023-02-03T00:42:12Z
INSDC status	public
Submitter Id	MGBC134874
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	95.97
completeness software	CheckM
contamination score	1.50
geographic location (latitude)	37.767815
geographic location (longitude)	-122.39416
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	SRR5927687
scientific_name	Helicobacter typhlonius
sequencing method	Illumina
taxonomic identity marker	multi-marker approach