Metagenome-assembled genome: single-wildmice_C1229... - BioSample

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Result Filters

Organism: Helicobacter typhlonius
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter

Attributes

broad-scale environmental context	mouse digestive system
collection date	not provided
environmental medium	feces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences
sample name	single-wildmice_C1229.21_1675168196
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-08
ENA-LAST-UPDATE	2023-02-08
External Id	SAMEA112444075
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-02-08T00:26:12Z
INSDC last update	2023-02-08T00:26:12Z
INSDC status	public
Submitter Id	single-wildmice_C1229.21_1675168196
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	99.0
completeness software	CheckM
contamination score	0.71
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMEA5690319
scientific_name	Helicobacter typhlonius
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357624 of study ERP115625.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
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