Metagenome-assembled genome: SRR17458609_metabat2_... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115104812; Sample name: SRR17458609_metabat2_5_1705322954; SRA: ERS17740529

Organism: uncultured Parvularcula sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula; environmental samples

Attributes

broad-scale environmental context	water
collection date	2017-03-19
geographic location	USA
environmental medium	plastisphere
investigation type	metagenome-assembled genome
project name	NextSeq 500 sequencing: Metagenomic analyses of Mature Plastic Biofilm
isolation source	plastisphere metagenome
assembly software	metaspades_v3.15.3
sample derived from	SAMN24661246
geographic location (longitude)	-79.89 DD
binning parameters	default
contamination score	0.48 %
ENA-FIRST-PUBLIC	2024-01-15T16:34:33Z
ENA-LAST-UPDATE	2024-01-15T16:34:33Z
completeness software	CheckM2_v1.0.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Parvularcula sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker	multi-marker approach
completeness score	95.03 %
geographic location (latitude)	26.73 DD
scientific_name	uncultured Parvularcula sp.
local environmental context	sea
metagenomic source	plastisphere metagenome
sequencing method	NextSeq 500
ENA-FIRST-PUBLIC	2024-01-15
ENA-LAST-UPDATE	2024-01-15