This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Pseudoruminococcus massiliensis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Acutalibacteraceae; Pseudoruminococcus

Attributes

broad-scale environmental context	hominid body
collection date	2012/2013
environmental medium	feces
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	Feces of Homo sapiens (DK)
sample name	E07188-L1_cleanbin_000002
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:13Z
ENA-LAST-UPDATE	2023-11-07T00:47:13Z
External Id	SAMEA114581995
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:13Z
INSDC last update	2023-11-07T00:47:13Z
INSDC status	public
Submitter Id	E07188-L1_cleanbin_000002
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	100
completeness software	MAGSCoT
contamination score	3.333333333
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Human gut
sample derived from	SAMN10093321
scientific_name	Pseudoruminococcus massiliensis
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets