Canada Basin MAG CB4_SCM.108

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Verrucomicrobiia bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; unclassified Verrucomicrobiia

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-24
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at subsurface chlorophyll maximum
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB4_SCM.108
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:17Z
ENA-LAST-UPDATE	2023-10-28T00:34:17Z
External Id	SAMEA114238149
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:17Z
INSDC last update	2023-10-28T00:34:17Z
INSDC status	public
Submitter Id	CB4_SCM.108
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	47.35
completeness software	CheckM v.1.0.7
contamination score	0.9
geographic location (latitude)	75.0008
geographic location (longitude)	149.9945
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586179
scientific_name	Verrucomicrobiae bacterium
taxonomic identity marker	Multi-marker approach