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Metagenome-Assembled Genome: SRR16244386_bin.17_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114095639; SRA: ERS16079622
Organism
Phocaeicola coprocola
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
Attributes
broad-scale environmental contextHuman digestive system
collection date2020-12-02
environmental mediumfaeces
geographic locationMalaysia
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameStudy was done to investigate the association between the gut microbiome of healthy individuals compared to individuals who are diagnosed with schizophrenia in the Malaysian population.
sample nameSRR16244386_bin.17_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-20T12:20:57Z
ENA-LAST-UPDATE2023-07-20T12:20:57Z
External IdSAMEA114095639
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-20T12:20:57Z
INSDC last update2023-07-20T12:20:57Z
INSDC statuspublic
Submitter IdSRR16244386_bin.17_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score97.76
completeness softwareCheckM
contamination score0.26
geographic location (latitude)6.1263
geographic location (longitude)100.3672
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN22138017
scientific_namePhocaeicola coprocola
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__Phocaeicola;s__Phocaeicola coprocola
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16244386 of study SRP340462.

BioProject
PRJEB63177
Retrieve all samples from this project

Submission
EBI; 2023-07-22
Accession:
SAMEA114095639
ID:
36681019

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