| broad-scale environmental context | Human digestive system |
|---|
| collection date | not provided |
|---|
| environmental medium | faeces |
|---|
| geographic location | not provided |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | human feces metagenome |
|---|
| project name | Alterations in gut microbiota might contribute to uremic toxicity and immune dysregulation in patients with end-stage renal disease. Hemodialysis patients are prone to infection and higher mortality following sepsis. The virulence factors in the gut metagenome have not been well studied in hemodialysis patients, which could be employed by microorganisms to successfully thrive and flourish in their hosts. In this study, we performed shotgun metagenomics sequencing on fecal DNA collected from 16 control subjects and 24 hemodialysis patients. |
|---|
| sample name | ERR9492516_bin.4_MetaWRAP_v1.3_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2023-07-13T20:34:53Z |
|---|
| ENA-LAST-UPDATE | 2023-07-13T20:34:53Z |
|---|
| External Id | SAMEA114063978 |
|---|
| INSDC center alias | EMG |
|---|
| INSDC center name | EMG |
|---|
| INSDC first public | 2023-07-13T20:34:53Z |
|---|
| INSDC last update | 2023-07-13T20:34:53Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | ERR9492516_bin.4_MetaWRAP_v1.3_MAG |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | metaspades v3.15.3 |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
|---|
| binning software | MetaWRAP v1.3 |
|---|
| broker name | EMG broker account, EMBL-EBI |
|---|
| completeness score | 99.46 |
|---|
| completeness software | CheckM |
|---|
| contamination score | 0.0 |
|---|
| geographic location (latitude) | not provided |
|---|
| geographic location (longitude) | not provided |
|---|
| local environmental context | colon |
|---|
| metagenomic source | human feces metagenome |
|---|
| sample derived from | SAMEA13854803 |
|---|
| scientific_name | uncultured Limosilactobacillus sp. |
|---|
| sequencing method | Illumina NovaSeq 6000 |
|---|
| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__ |
|---|
| taxonomic identity marker | multi-marker approach |
|---|