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Uncultivated Treponema sp. UBA6852 genome recovered from SRX834631

Identifiers
BioSample: SAMN06455448; Sample name: Treponema sp. UBA6852; SRA: SRS2035145
Organism
Treponema sp. UBA6852
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationKenya
isolateUBA6852
isolation sourcefeces
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX834631 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated93.71%
contamination_estimated0.17%
environmental_sampletrue
genome_coverage21.84
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1747030.
Description

Uncultivated genome recovered from an assembly of the SRX834631 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455448
ID:
6455448

BioProject SRA Nucleotide

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