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MGBC112351

Identifiers
BioSample: SAMEA112386018; SRA: ERS14496330
Organism
Muribaculum intestinale
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Muribaculum
Attributes
broad-scale environmental contextmouse gut
collection datenot provided
environmental mediumFaeces
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourcefeces
project nameMetagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample nameMGBC112351
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-02-03
ENA-LAST-UPDATE2023-02-03
External IdSAMEA112386018
INSDC center aliasUNIVERSITY OF CAMBRIDGE
INSDC center nameUNIVERSITY OF CAMBRIDGE
INSDC first public2023-02-03T00:41:47Z
INSDC last update2023-02-03T00:41:47Z
INSDC statuspublic
Submitter IdMGBC112351
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes_v3.10.1
binning parametersdefault parameters, kmer: 4
binning softwaremetaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score95.25
completeness softwareCheckM
contamination score0.00
geographic location (latitude)46.20176
geographic location (longitude)6.1466
local environmental contextmouse-associated habitat
metagenomic sourcemouse gut metagenome
sample derived fromSRR7691144
scientific_nameMuribaculum intestinale
sequencing methodIllumina
taxonomic identity markermulti-marker approach
BioProject
PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

Submission
EBI; 2023-02-06
Accession:
SAMEA112386018
ID:
33103355

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