Metagenome-assembled genome: SRR6158308_bin.49_CON... - BioSample

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Result Filters

Organism: uncultured Synechococcus sp.
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; environmental samples

Attributes

collection date	2015-12-01
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	Italy
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	We studied the resistome (and more specifically the antibiotic resistance genes) in the effluents of 3 WWTPs and in the receiving waters when mixed in different proportions
sample name	SRR6158308_bin.49_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036859
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:07Z
INSDC last update	2023-01-03T00:32:07Z
INSDC status	public
Submitter Id	SRR6158308_bin.49_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.78
completeness software	CheckM
contamination score	3.03
geographic location (latitude)	45.93
geographic location (longitude)	8.58
metagenomic source	wastewater metagenome
sample derived from	SAMN07774221
scientific_name	uncultured Synechococcus sp.
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6158308 of study SRP119748.