MAG MJ130916B_bin-104 from assembly ERS4600551

Identifiers: BioSample: SAMEA6949298; SRA: ERS4659177

Organism: uncultured Gordonia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; environmental samples

Attributes

ammonium	17.7393425356173
chlorophyll	21.74
collection date	2013-09-16
dissolved organic carbon	2523.58313836829
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
methane	154.51
oxygen	0.5
pH	5.96
project name	microbes in stratified freshwaters
sample name	MJ130916B_bin-104
temperature	6.48
total phosphorus	2.06626498905751
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:05:43Z
External Id	SAMEA6949298
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:05:43Z
INSDC status	public
Submitter Id	MJ130916B_bin-104
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	99.82
completeness software	checkm
contamination score	0.0
geographic location (depth)	2.5
geographic location (latitude)	61.23083333333334
geographic location (longitude)	25.142222222222223
gtdb_taxonomy	d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia;s__Gordonia polyisoprenivorans
metagenomic OTU	anoxic_mOTU_2567
metagenomic source	lake water metagenome
nitrile+nitrite	36
region	Evo
sample derived from	ERS4600551
sample owner	Jatta Saarenheimo
scientific_name	uncultured Gordonia sp.
sequencing method	NovaSeq
site name	Mekkojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6949298
ID:: 15260910

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MAG MJ130916B_bin-104 from assembly ERS4600551

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