Metagenome-assembled genome: MGG27417_1680015517

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Result Filters

Organism: Ligilactobacillus agilis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus

Attributes

broad-scale environmental context	Host-associated
collection date	2014-11-05
environmental medium	Ileum
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR6032585 of study SRP109346.
sample name	MGG27417_1680015517
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-23
ENA-LAST-UPDATE	2023-04-23
External Id	SAMEA112936600
INSDC center alias	UNIVERSITY OF GENEVA
INSDC center name	UNIVERSITY OF GENEVA
INSDC first public	2023-04-23T00:20:09Z
INSDC last update	2023-04-23T00:20:09Z
INSDC status	public
Submitter Id	MGG27417_1680015517
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSpades_v3.13
binning parameters	default
binning software	metagenome_atlas_v2.3
completeness score	97.47
completeness software	checkM_v1.1
contamination score	0.79
geographic location (latitude)	-76.87105
geographic location (longitude)	39.152786
local environmental context	Mouse digestive system
metagenomic source	mouse gut metagenome
sample derived from	SAMN07248812
scientific_name	Ligilactobacillus agilis
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set SRP109346. This sample represents a Metagenome-assembled genome from the metagenomic run SRR6032585.