binned metagenome: MGG00517_1676042907

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Result Filters

Organism: Muribaculum intestinale
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Muribaculum

Attributes

broad-scale environmental context	Host-associated
collection date	not provided
environmental medium	Cecum
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Metagenomic data of mice
sample name	MGG00517_1676042907
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-04-24
ENA-LAST-UPDATE	2023-04-24
External Id	SAMEA112634966
INSDC center alias	UNIVERSITY OF GENEVA
INSDC center name	UNIVERSITY OF GENEVA
INSDC first public	2023-04-24T04:18:41Z
INSDC last update	2023-04-24T04:18:41Z
INSDC status	public
Submitter Id	MGG00517_1676042907
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSpades_v3.13
binning parameters	default
binning software	metagenome_atlas_v2.3
completeness score	98.68
completeness software	checkM_v1.1
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Mouse digestive system
metagenomic source	mouse gut metagenome
sample derived from	SAMN04201161
scientific_name	Muribaculum intestinale
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach